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Test Files for taxonomic classification #344

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Test Files for taxonomic classification #344

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c1acb77
add some small methods that will be further used for tax class
heracle Jul 28, 2021
3b07820
address comments
heracle Jul 28, 2021
7a2dfaf
add some small methods that will be further used for tax class
heracle Jul 28, 2021
2cb6d99
add data files used for taxonomic integration and unit tests
heracle Jul 28, 2021
3678aa4
rebase
heracle Jul 28, 2021
0fd1512
delete tax test files
heracle Aug 3, 2021
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -2,6 +2,7 @@
*.fai
!metagraph/tests/data/*.fa
!metagraph/tests/data/*.fai
!metagraph/tests/data/taxonomic_data/*.fa
metagraph/tests/data/*dump_test*
projects/*/temp
visualization/geolocation/data/*
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7 changes: 6 additions & 1 deletion metagraph/src/common/serialization.cpp
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Expand Up @@ -326,6 +326,9 @@ void serialize_number_number_map(std::ostream &out,
template
void serialize_number_number_map(std::ostream &out,
const std::unordered_map<uint32_t, uint32_t> &map);
template
void serialize_number_number_map(std::ostream &out,
const tsl::hopscotch_map<uint64_t, uint64_t> &map);

template <class Map>
bool load_number_number_map(std::istream &in, Map *map) {
Expand Down Expand Up @@ -374,7 +377,9 @@ bool load_number_number_map(std::istream &in,
template
bool load_number_number_map(std::istream &in,
std::unordered_map<uint32_t, uint32_t> *map);

template
bool load_number_number_map(std::istream &in,
tsl::hopscotch_map<uint64_t, uint64_t> *map);

template <class Map>
void serialize_string_number_map(std::ostream &out, const Map &map) {
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7 changes: 7 additions & 0 deletions metagraph/src/common/utils/string_utils.cpp
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Expand Up @@ -7,6 +7,13 @@

namespace utils {

bool starts_with(const std::string &str, const std::string &prefix) {
if (prefix.size() > str.size()) {
return false;
}
return prefix == std::string_view(str).substr(0, prefix.size());
}

bool ends_with(const std::string &str, const std::string &suffix) {
auto actual_suffix = str.substr(
std::max(0, static_cast<int>(str.size())
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2 changes: 2 additions & 0 deletions metagraph/src/common/utils/string_utils.hpp
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Expand Up @@ -8,6 +8,8 @@

namespace utils {

bool starts_with(const std::string &str, const std::string &prefix);

bool ends_with(const std::string &str, const std::string &suffix);

std::string remove_suffix(const std::string &str, const std::string &suffix);
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21 changes: 21 additions & 0 deletions metagraph/tests/data/taxonomic_data/dumb.accession2taxid
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accession accession.version taxid gi
NC_01 NC_01.1 10001 10001
NC_02 NC_02.1 10002 10002
NC_03 NC_04.1 10003 10003
NC_04 NC_04.1 10004 10004
NC_05 NC_05.1 10005 10005
NC_06 NC_06.1 10006 10006
NC_07 NC_07.1 10007 10007
NC_08 NC_08.1 10008 10008
NC_09 NC_09.1 10009 10009
NC_10 NC_10.1 10010 10010
NC_11 NC_11.1 10011 10011
NC_12 NC_12.1 10012 10012
NC_13 NC_13.1 10013 10013
NC_14 NC_14.1 10014 10014
NC_15 NC_15.1 10015 10015
NC_16 NC_16.1 10016 10016
NC_17 NC_17.1 10017 10017
NC_18 NC_18.1 10018 10018
NC_19 NC_19.1 10019 10019
NC_20 NC_20.1 10020 10020
20 changes: 20 additions & 0 deletions metagraph/tests/data/taxonomic_data/dumb_nodes.dmp
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10001 | 10001
10002 | 10001
10003 | 10001
10004 | 10002
10005 | 10002
10006 | 10002
10007 | 10003
10008 | 10003
10009 | 10004
10010 | 10004
10011 | 10004
10012 | 10005
10013 | 10005
10014 | 10006
10015 | 10006
10016 | 10007
10017 | 10007
10018 | 10007
10019 | 10008
10020 | 10008
161 changes: 161 additions & 0 deletions metagraph/tests/data/taxonomic_data/full_hierarchy_sequences.fa
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>gi|10001|ref|NC_01.1| Test sample 1 (root)
CGCCGGCCTCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGGGGCTATTCGAG
AGGGATCAATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTGT
CTATCTCGCATTCAATGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGACAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTTAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCATCGTAGCCAA
TATGACTTAAACGAGGGGGCTGGGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGCAATACC
>gi|10002|ref|NC_02.1| Test sample 2 (dist to root = 1)
CGCCGGCCTCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGCGGCTATTCGAG
AGGGATCTATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTGT
CTATCTCGCATTCAATGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGAAAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTAAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCATCGTAGCCAA
TATGACTTAAACCAGGGGGCTGGGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGCAATACC
>gi|10003|ref|NC_03.1| Test sample 3 (dist to root = 1)
CGCCGGCCCCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGGGGCTATTCGAG
AGGGATCAATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTTT
CTATCTCGCATCCAATGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGACAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTTAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCATCGTAGCAAA
TATGACTTAAACGGGGGGGCTGGGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGCAATACC
>gi|10004|ref|NC_04.1| Test sample 4 (dist to root = 2)
CGCCGGCCTCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGCGGCTATTCGAG
AGGGATCTATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTTGTGT
CTATCTCGCATTCAATGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGAAAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCATTACTAAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCATCGTAGCCAA
TATGACTTAACCCAGGGGGCTGGGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGAAATACC
>gi|10005|ref|NC_05.1| Test sample 5 (dist to root = 2)
CGCCGGCCTCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGCGGCTATTCGAG
AGGGATCTATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTGT
CTATCTCGCATTCAATGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCTCTTCGGCAGTAGCAGAAAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTAAGCAAAT
TAAATCTAGTGTTAGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCATCGTAGCCAA
TATGACTTAAACCAGGGGGCTGTGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGCAATACC
>gi|10006|ref|NC_06.1| Test sample 6 (dist to root = 2)
CGCCGGCCTCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGCGGCTATTCGAG
AGGGATCTATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTGT
CTATCTCGCATTCAATGCAGATTACTCCGATGGGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGAAAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACATAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTAAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGACATTTAATGGGTTGGTATTCTTGTAGTAGGGTCATCGTAGCCAA
TATGACTTAAACCAGGTGGCTGGGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGCAATACC
>gi|10007|ref|NC_07.1| Test sample 7 (dist to root = 2)
CGCCGGCCCCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGGGGCCATTCGAG
AGGGATCAATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTTT
CTATCTCGCATCCAATGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGACAAGTTTGAATTGGGCGAAACATACTTGCTTCCTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTTAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCACCGTAGCAAA
TATGACTTAAACGGGGGGGCTGGGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGCCATACC
>gi|10008|ref|NC_08.1| Test sample 8 (dist to root = 2)
CGCCGGCCCCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGGGGCTATTCGAG
AGGGATCAATGGGTCAGATCACGGCCGTAGCTAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTTT
CTATCTCGCATCCAATGCAGATTACTCCGATGATCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGACAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTTAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGACATTTTATGAGTTGGTATTCTTGTAGTAGGGTCATCGTAGCAAA
TATGACTTAAACGGGGGGGCTGGGGCTGTTCGGAGACAAATCTACGCCTACTACAAACTCTAGCAATACC
>gi|10009|ref|NC_09.1| Test sample 9 (dist to root = 3)
CGCCGGCCTCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGCGGCTATTCGAG
AGGGATCTATGGTTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTTGTGT
CTATCTCGCATTCAATGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGGAAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCATTACTAAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCATCGTAGCCAA
TATGACTTAACCAAGGGGGCTGGGGCTGTTCGCAGGCAAATCTACGCCTACTACAAACTCTAGAAATACC
>gi|10010|ref|NC_10.1| Test sample 10 (dist to root = 3)
CGCCGGCCTCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGCGGTTATTCGAG
AGGGATCTATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTTGTGT
CTATCTCGCATTCAATGCAGATTACTCCGATGAGCGACACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGAAAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACCAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCATTACTAAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCATCTTAGCCAA
TATGACTTAACCCAAGGGGCTGGGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGAAATACC
>gi|10011|ref|NC_11.1| Test sample 11 (dist to root = 3)
CGCCGGCCTCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGCGGCTATTCGAG
GGGGATCTATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTTGTGT
CTATCTCGCATTCATTGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGAAAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCATTACTAAGCAAAT
TAAATCGAGTGTTGGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCATCGTAGCCAA
TTTGACTTAACCCAGGGGGCTGGGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGAAATACC
>gi|10012|ref|NC_12.1| Test sample 12 (dist to root = 3)
CGGCGGCCTCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGCGGCTATTCGAG
AGGGATCTATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAGAGGGTGACTCTGGTGT
CTATCTCGCATTAAATGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCTCTTCCGCAGTAGCAGAAAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTAAGCAAAT
TAAATCTAGTGTTAGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCATCGTAGCCAA
TATGACTTAAACCAGGGGGCTGTGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGCAATACC
>gi|10013|ref|NC_13.1| Test sample 13 (dist to root = 3)
CGCCGGCCTCCCCAAAAAATCCCCGGAGGAATATTTCGACCAAACAATGCACTTCCGGCGGCTATTCGAG
AGGGATCTATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTGT
CAATCTCGCATTCAATGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCTCTTCGGCAGTAGCAGAAAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTAACAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTAAGCAAAT
TAAATCTAGTGTTAGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCATCGTAGCCAA
TATGACTTAAACCAGGGGGCTGTGGCTGTTCGCAGACCAATCTACGCCTACTACAAACTCTAGCAATACC
>gi|10014|ref|NC_14.1| Test sample 14 (dist to root = 3)
CGCCGGCCTCCCCAAAAAATCCCCGGGGGAATATTTCGACCACACAATGCACTTCCGGCGGCTATTCGAG
AGGGATCTATGGGTCGGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTGT
CTATCTCGCATTCAATGCAGATTACTCCGATGGGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGAGAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGATAAGTTGTAACATAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTAAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGACATTTAATGGGTTGGTATTCTTGTAGTAGGGTCATCGTAGCCAA
TATGACTTAAACCAGGTGGCTGGGGCTGTTCGCAGACAAATCTACGGCTACTACAAACTCTAGCAATACC
>gi|10015|ref|NC_15.1| Test sample 15 (dist to root = 3)
CGCCGGCCTCCCCAAAAAATCCCCGGGGGAAAATTTCGACCAAACAATGCACTTCCGGCGGCTATTCGAG
AGGGATCTATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAATGGGTGACTCTGGTGT
CTATCTCGCATTCAATGCAGATTACTCCGATGGGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGAAAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACATAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTAAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGAAATTTAATGGGTTGGTATTCTTGTAGTATGGTCATCGTAGCCAA
TATGACTTAAACCAGGTGGCTGGCGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGCAATACC
>gi|10016|ref|NC_16.1| Test sample 16 (dist to root = 3)
CGCCGGCCCCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGGGGCCTTTCGAG
AGGGATCAATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTTT
CTATCTCGCATCCAATGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCACTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGACAAGTTTGAATTGGGCGAAACATACTTGCTTCCTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACGGTAGCCTTTGGGACTTTCACTACTTAGCAAAT
TAAATCGAGTGTTGGCCGCATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCACCGTAGCAAA
TATGACTTAAACGTGGGGGCTGGGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGCCATACC
>gi|10017|ref|NC_17.1| Test sample 17 (dist to root = 3)
CGCCGGCCCCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGGGGCCATTCGAG
AGGGATCAATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTTT
CTATCTCGCATCCCATGCAGATTACTCCGATGAGCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATAACTGTCACTTCGGCAGTAGCAGACAAGTTTGAATTGGGCGAAACATACTTGCTTCCTC
TTGAAAAATTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTTAGCAAAT
TAAATCGAGTGTTAGCCGAATGTAGACATTTAATGAGTTGGTATTCTTGTAGTAGGGTCACCGTAGCAAA
TATGACTTAAACGGGGGGGCTCGGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGCCATACC
>gi|10018|ref|NC_18.1| Test sample 18 (dist to root = 3)
CGCCGGCCCCCCCAAAAAATCCCCGGGGGAATATTTCGACCACACAATGCACTTCCGGGGGCCATTCGAG
AGGGATCAATGGGTCAGATCACGGCCGTAGCAAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTTT
CTATCTCGCATCCAATGCAGATTACTCCGATGATCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGACAAGTTTGAATTGGGCGAAACATACTTGCTTCCTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTTGGCAAAT
TAAATCGAGTGTTAGCCGCATCTAGACATTTAATGAGTTGGTTTTCTTGTAGTAGGGTCACCGTAGCAAA
TATGACTTAAACGGGGGGGCTGGGGCTGTTCGCAGACAAATCTACGCCTACTACAAACTCTAGCCATACC
>gi|10019|ref|NC_19.1| Test sample 19 (dist to root = 3)
CGCCGGCCGCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGGGGCTATTCGAG
AGGGATCAATGGGTCAGATCACGGCCGTAGCTAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTTT
CTATCTCGCATCCAATGCCGATTACTCCGATGATCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCATTTCGGCAGTAGCAGACAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACAGTAGCCTTTGGGACTTTCACTACTTAGCAAAT
TAAATCCAGTGTTAGCCGCATGTAGACATTTTATGAGTTGGTATTCTTGTAGTAGGGTCATCGTAGCAAA
TATGACCTAAACGGGGGGGCTGGGGCTGTTCGGAGACAAATCTACGCCTACTACAAACTCTAGCAATACC
>gi|10020|ref|NC_20.1| Test sample 20 (dist to root = 3)
CGCCGGCCCCCCCAAAAAATCCCCGGGGGAATATTTCGACCAAACAATGCACTTCCGGGGGCTATTCGAG
AGGGATCAATGGGTCAGATCACGGCCGTAGCTAAGCTCAATCACTCAGAAGTAAAGGGTGACTCTGGTTT
CTATCTCGCATCCAATGCAGATTACTCCGATTATCGAAACAAAGAGTGGGCTAAGTACACGCCCTCAATG
CATCTTGGCATGACTGTCACTTCGGCAGTAGCAGACAAGTTTGAATTGGGCGAAACATACTTGCTTACTC
TTGAAAAGTTGTAACAAAACGTACCAACTCACGCGACCGTAGCCTTTGGGACTTTCACTACTTAGCAAAT
TAAATCGAGTGTTAGCCGCATGTAGACATTTTATGAGTTGGTACTCTTGTAGTAGGGTCATCGTAGCAAA
TATGACTTAAACGGGGGGGCTGGGGCTGTTCGGAGACAAATCTACGCCTACTACCAACTCTAGCAATACC

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