Skip to content
Open
Show file tree
Hide file tree
Changes from 26 commits
Commits
Show all changes
29 commits
Select commit Hold shift + click to select a range
62531af
Add Workflow Management Fundamentals side quest
pinin4fjords Oct 11, 2025
5d89094
Restructure tutorial for proper learner experience
pinin4fjords Jan 12, 2026
c2ed8de
Make tutorial executable with mock bioinformatics processes
pinin4fjords Jan 12, 2026
c7a228c
Restructure tutorial for hands-on learning experience
pinin4fjords Jan 12, 2026
1fcd4a1
Restructure tutorial around problem-solution pairs
pinin4fjords Jan 12, 2026
09e49bd
Add reflection questions and collaboration emphasis
pinin4fjords Jan 12, 2026
f86ce2c
Add workflow_management_fundamentals to mkdocs navigation
pinin4fjords Jan 12, 2026
a8d8ff6
Restructure tutorial to use real RNA-seq data and tools
pinin4fjords Jan 12, 2026
974e393
Reframe Section 3 around declarative environment management
pinin4fjords Jan 12, 2026
46f782f
Fix bugs and add workflow management benefits emphasis
pinin4fjords Jan 12, 2026
9ae6d9f
Fix heading numbering to use 1.x/2.x scheme
pinin4fjords Jan 12, 2026
bf55fd8
Restructure tutorial with incremental Before/After blocks
pinin4fjords Jan 12, 2026
f958031
Add data symlink to solutions directory for testing
pinin4fjords Jan 12, 2026
3098fb8
Swap Before/After tabs to match other tutorials
pinin4fjords Jan 12, 2026
0f0ca32
Add explanatory context throughout tutorial
pinin4fjords Jan 12, 2026
d2d1818
Reframe explanations: bash limitations, Nextflow contrasts
pinin4fjords Jan 12, 2026
1f99592
Add quality framework and clarify scripting critique
pinin4fjords Jan 13, 2026
9df4155
Fix scalability assessment in summaries
pinin4fjords Jan 13, 2026
fbff259
prettier
pinin4fjords Jan 13, 2026
0c1c878
Add note that Part 2 isn't a proper Nextflow tutorial
pinin4fjords Jan 13, 2026
a12508b
Add Summary and What's Next outro section
pinin4fjords Jan 13, 2026
2753e98
Add standardization benefit to summary
pinin4fjords Jan 13, 2026
66e866a
Generalize standardization point
pinin4fjords Jan 13, 2026
f3667fa
prettier
pinin4fjords Jan 13, 2026
cdace3d
Merge branch 'master' into workflow-management-fundamentals-side-ques…
pinin4fjords Jan 13, 2026
19afd47
Fix markdown lint: add blank lines before lists
pinin4fjords Jan 13, 2026
e650cca
Address Adam's review comments on workflow management side quest
pinin4fjords Jan 13, 2026
4245ff9
Eliminate 'No Tool Installation Needed' section
pinin4fjords Jan 14, 2026
a41659b
Clean up language and remove unnecessary dashes
pinin4fjords Jan 14, 2026
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions docs/side_quests/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,7 @@ Otherwise, select a side quest from the table below.
| Side Quest | Time Estimate for Teaching |
| -------------------------------------------------------------------------- | -------------------------- |
| [Nextflow development environment walkthrough](./ide_features.md) | 45 mins |
| [Workflow Management Fundamentals](./workflow_management_fundamentals.md) | 1.5 hours |
| [Essential Nextflow Scripting Patterns](./essential_scripting_patterns.md) | 90 mins |
| [Metadata in workflows](./metadata.md) | 45 mins |
| [Splitting and Grouping](./splitting_and_grouping.md) | 45 mins |
Expand Down
Loading