Add Workflow Management Fundamentals side quest#679

Open

pinin4fjords wants to merge 29 commits intomasterfrom

workflow-management-fundamentals-side-quest-v2

Commits on Oct 16, 2025

Add Workflow Management Fundamentals side quest

pinin4fjords
and
claude
committed

Commits on Jan 12, 2026

Restructure tutorial for proper learner experience

pinin4fjords
and
claude
committed
Make tutorial executable with mock bioinformatics processes

pinin4fjords
and
claude
committed
Restructure tutorial for hands-on learning experience

pinin4fjords
and
claude
committed
Restructure tutorial around problem-solution pairs

pinin4fjords
and
claude
committed
Add reflection questions and collaboration emphasis

pinin4fjords
and
claude
committed
Add workflow_management_fundamentals to mkdocs navigation

pinin4fjords
and
claude
committed
Restructure tutorial to use real RNA-seq data and tools

pinin4fjords
and
claude
committed
Reframe Section 3 around declarative environment management

pinin4fjords
and
claude
committed
Fix bugs and add workflow management benefits emphasis

pinin4fjords
and
claude
committed
Fix heading numbering to use 1.x/2.x scheme

pinin4fjords
and
claude
committed
Restructure tutorial with incremental Before/After blocks

pinin4fjords
and
claude
committed
Add data symlink to solutions directory for testing

pinin4fjords
and
claude
committed
Swap Before/After tabs to match other tutorials

pinin4fjords
and
claude
committed
Add explanatory context throughout tutorial

pinin4fjords
and
claude
committed
Reframe explanations: bash limitations, Nextflow contrasts

pinin4fjords
and
claude
committed

Commits on Jan 13, 2026

Commits on Jan 14, 2026