The load from csv function calls dataset_from_csv with arguments in the incorrect order.
# in phippery/cli.py
def load_from_csv(
sample_table,
peptide_table,
counts_matrix,
output,
):
# eventually calls the function ...
ds = utils.dataset_from_csv(counts_matrix, peptide_table, sample_table)
# but in phippery/utils.py
def dataset_from_csv(
peptide_table_filename, sample_table_filename, counts_table_filename
):
it is expecting them in a different order.
The call should be ...
ds = utils.dataset_from_csv(peptide_table, sample_table, counts_matrix)
The load from csv function calls
dataset_from_csvwith arguments in the incorrect order.it is expecting them in a different order.
The call should be ...