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Matsen Group

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  1. plugins plugins Public

    Claude Code plugin with specialized agents for scientific writing, code review, and technical documentation

    24 5

  2. claude-code-agents claude-code-agents Public archive

    Agents for Claude Code

    23 1

  3. phippery phippery Public

    Python 19 3

  4. netam netam Public

    Neural networks to model BCR affinity maturation

    Python 19 2

  5. gctree gctree Public

    GCtree: phylogenetic inference of genotype-collapsed trees

    Python 18 2

  6. olmsted olmsted Public

    B-cell repertoire and clonal family tree explorer

    JavaScript 18 5

Repositories

Showing 10 of 141 repositories
  • matsengrp/dasm-epistasis-experiments's past year of commit activity
    Jupyter Notebook 0 0 7 0 Updated Sep 25, 2026
  • larch2 Public
    matsengrp/larch2's past year of commit activity
    C++ 0 MIT 0 9 3 Updated Sep 17, 2026
  • olmsted Public

    B-cell repertoire and clonal family tree explorer

    matsengrp/olmsted's past year of commit activity
    JavaScript 18 AGPL-3.0 5 21 7 Updated Sep 13, 2026
  • tex-template Public template
    matsengrp/tex-template's past year of commit activity
    TeX 4 0 1 1 Updated Sep 8, 2026
  • flu-usher Public
    matsengrp/flu-usher's past year of commit activity
    Python 0 0 7 0 Updated Aug 24, 2026
  • flu-mut-rates Public
    matsengrp/flu-mut-rates's past year of commit activity
    Jupyter Notebook 1 0 1 2 Updated Aug 24, 2026
  • olmsted-cli Public
    matsengrp/olmsted-cli's past year of commit activity
    Python 0 0 7 1 Updated Aug 24, 2026
  • multidms Public

    Joint modeling of multiple deep mutational scanning experiments

    matsengrp/multidms's past year of commit activity
    Python 2 MIT 0 12 1 Updated Aug 19, 2026
  • matsengrp/antigen-forecasting's past year of commit activity
    Jupyter Notebook 2 MIT 0 7 3 Updated Aug 13, 2026
  • QA013.2-HIV-bnAb-analysis Public

    Analysis code and results on VirScan data for manuscript on non-HIV antigens to initiate QA013.2 HIV bnAb lineage.

    matsengrp/QA013.2-HIV-bnAb-analysis's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 10, 2026

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