I am a PhD scholar at Gujarat Biotechnology University (GBU) specializing in structural biology and protein engineering with a focus on protein design, folding, and dynamics. My expertise lies in performing both classical and advanced molecular dynamics (MD) simulations, including steered MD, metadynamics, and umbrella sampling. Additionally, my research involves identifying small-molecule drug candidates to combat WHO-priority multi-drug resistant (MDR) strains.
DTDP A Linux-native pipeline for multi-drug resistance (MDR) research. Integrates comparative genomics and AlphaFold structural data to pinpoint clinically essential targets.
NirA_DeepDocking Deep learning platform for screening phytochemical libraries against the NirA enzyme. Leverages neural network scoring to filter 9M+ compounds with surgical precision.
GUI_UniDock Accelerates virtual screening by 2000x using NVIDIA GPU power. Simplifies complex docking telemetry into an intuitive visual console for massive-scale ligand prioritization.
BLAST_Suite_X Sci-Fi inspired GUI for NCBI BLAST+ that abstracts away command-line complexity. Features multithreaded alignment tracking and interactive sequence hit analysis.
Bhajan_Schedular A mission-critical task management tool built with organizational logic. Designed for high-efficiency scheduling and database management.
The snake eats my daily contributions to "fold" new code sequences.
Current Focus: De novo protein therapeutics & Generative design.
Command Center: Gujarat Biotechnology University (GBU), GIFT City, Gujarat, India.
Operational Goal: Bridging the gap between manual labour, structural biology and automation.
A diagnostic overview of core competencies and instrumentation expertise.
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Open to structural biology and bioinformatics synergy.
Institution: Gujarat Biotechnology University (GBU), GIFT City, Gandhinagar, Gujarat, India.
Contact: thedrsoham[at]gmail[dot]com
"Not the end, but the beginning of a mission."