Issues

• Clarification Needed on Generation of hpo.annotation.tab File for HPO Enrichment Analysis

  tanghaibao/goatools#312 · Filter by author aybugealtay opened on Aug 7, 2025

• Corrected P-values

  tanghaibao/goatools#309 · Filter by author raunimarques opened on Feb 24, 2025
  1

• No TAXID for Ecoli and incompatibility of the Ecoli specific annotation file

  tanghaibao/goatools#306 · Filter by author FH96 opened on Oct 30, 2024

• I couldn't get "regulates" ancestors terms

  bug
  tanghaibao/goatools#304 · Filter by author 10myl200 opened on Sep 16, 2024
  7

  

• Keeping terms not in DAG

  tanghaibao/goatools#291 · Filter by author Prunoideae opened on Apr 27, 2024
  2

• Optimising go term tests

  tanghaibao/goatools#272 · Filter by author francicco opened on Jun 15, 2023

• What's the point of removing genes with identical identifiers?

  tanghaibao/goatools#271 · Filter by author shelkmike opened on Jun 2, 2023

• Conditional tests?

  enhancement
  tanghaibao/goatools#264 · Filter by author sjfleming opened on Feb 24, 2023

• Keep on receiving **FATAL: NO POPULATION ITEMS SEEN IN THE ANNOTATIONS in my current work

  tanghaibao/goatools#260 · Filter by author HelloWorldLTY opened on Feb 7, 2023

• Different results when restricting background set to only include genes with at least one annotation term

  tanghaibao/goatools#259 · Filter by author Maryam-Haghani opened on Jan 27, 2023
  1

• Error: no population items seen in the annotations when using GAF file

  tanghaibao/goatools#254 · Filter by author jlastoll opened on Dec 6, 2022
  1

  

• Some questions about gene selection

  tanghaibao/goatools#249 · Filter by author HelloWorldLTY opened on Oct 15, 2022

• Error message while running goatools

  tanghaibao/goatools#247 · Filter by author akaur1988 opened on Jul 27, 2022

• Does gene ontology enrichment analysis work with Ensembl gene ids?

  tanghaibao/goatools#244 · Filter by author BerkKilicoglu opened on Jul 11, 2022

• Unhelpful Documentation, Missing High Level Interface

  tanghaibao/goatools#241 · Filter by author fratajcz opened on Jun 15, 2022
  5

• cannot import name 'ncbi_tsv_to_py' from 'goatools.cli.ncbi_gene_results_to_python'

  tanghaibao/goatools#240 · Filter by author jjacobsli opened on Apr 22, 2022

• render DAG w JSON

  tanghaibao/goatools#225 · Filter by author chrispam10 opened on Aug 17, 2021
  2

• Issues Generating Background GeneSet

  tanghaibao/goatools#224 · Filter by author TTCooper-PhD opened on Jul 27, 2021
  1

• questions about semantic similarity notebook

  tanghaibao/goatools#223 · Filter by author sunyi000 opened on Jul 26, 2021

• Question: DAGs like how AgriGO or topGO do

  tanghaibao/goatools#212 · Filter by author harish0201 opened on May 26, 2021
  2

• How do I go from a list of genes to a list of intersecting pathways

  tanghaibao/goatools#186 · Filter by author catskillsresearch opened on Nov 7, 2020
  2

• Small bug when checking GO IDs in the association file

  tanghaibao/goatools#145 · Filter by author aysunrhn opened on Dec 24, 2019
  1

• Using GOATools for Genomic Presence Comparison

  tanghaibao/goatools#132 · Filter by author NBBense opened on Jul 16, 2019

• Error: Only few genes/proteins in the study are found in the background population.

  tanghaibao/goatools#130 · Filter by author arumds opened on May 27, 2019
  7

• Low pVal/FDR

  tanghaibao/goatools#104 · Filter by author phillipeloher opened on May 23, 2018
  4