Test/no rule evals - #12

Draft

janisshin wants to merge 19 commits into

mainfrom

test/no-rule-evals

Commits on Apr 13, 2026

Commits on Apr 16, 2026

fix(reaction): preserve unmapped metabolites and drop dead failed_mapping handling
janisshin
committed

Commits on Apr 17, 2026

feat: create option for reaction annotations generation only (no evaluation) through rulesbased
janisshin
committed
feat: create option to in-/ex-clude exchange reactions for reaction annotation
janisshin
committed

Commits on Apr 21, 2026

Commits on Apr 23, 2026

feat(reaction-kegg): support KEGG-compound species inputs and add model context for LLM ranking
janisshin
committed

Commits on May 10, 2026

results file; add toggle to disable cofactor removal
janisshin
committed

Commits on May 11, 2026

Commits on May 14, 2026