Search results

Pipeline not properly creating output folders

Status: Open.

#625 In sunbeam-labs/sunbeam;

· ArieDash opened on Jun 16, 2026

Prevent writing uncompressed fastq during cutadapt

Status: Open.

#624 In sunbeam-labs/sunbeam;

· naomiwilson opened on May 28, 2026

Config cleanup needed

Status: Open.

#617 In sunbeam-labs/sunbeam;

· kylebittinger opened on Apr 10, 2026

Double check sequences in default adapters file

Status: Open.

#615 In sunbeam-labs/sunbeam;

· kylebittinger opened on Apr 10, 2026

kraken table taxonomy rank not assigned correctly with kraken database k2_standard_20251015

Status: Open.

#614 In sunbeam-labs/sunbeam;

· WeimingWHu opened on Apr 9, 2026

Refactor decontam.py

Status: Open.

#613 In sunbeam-labs/sunbeam;

· kylebittinger opened on Apr 9, 2026

Consider using samtools

Status: Open.

#612 In sunbeam-labs/sunbeam;

· kylebittinger opened on Apr 9, 2026

Consider replacing fastqc

Status: Open.

#611 In sunbeam-labs/sunbeam;

· kylebittinger opened on Apr 9, 2026

Consider installing snakemake-executor-plugin-slurm when the slurm profile is used to initialize a sunbeam project

enhancement

Status: Open.

#596 In sunbeam-labs/sunbeam;

· Ulthran opened on Nov 17, 2025

Preprocess report overcounting low-complexity reads

bug

Status: Open.

Bug

#592 In sunbeam-labs/sunbeam;

· naomiwilson opened on Nov 6, 2025

Import behavior with editable install

bug

Status: Open.

#583 In sunbeam-labs/sunbeam;

· Ulthran opened on Oct 15, 2025

documentation update

Status: Open.

#580 In sunbeam-labs/sunbeam;

· MasonMandolfo opened on Oct 6, 2025