Merge branch 'fix/investigate' of github.com:stjudecloud/workflows in…

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Python CI on: push

python-format

python-lint

Validate Inputs on: push

validate_inputs

Workflows Miniwdl Check on: push

miniwdl_check

Workflows Sprocket Lint on: push

sprocket_lint

Workflows Sprocket Check on: push

sprocket_check

Build and Test on: push

call-build / list-images

call-build / build-images (docker/umap)

call-build / build-images (docker/pandas)

call-build / build-images (docker/estimate)

call-build / build-images (docker/bwa)

call-build / build-images (docker/util)

call-build / build-images (docker/minfi)

call-build / build-images (docker/python-plotting)

call-test / list-tags

call-test / pytest_check (arriba, sprocket)

call-test / pytest_check (arriba, miniwdl)

call-test / pytest_check (bwa, sprocket)

call-test / pytest_check (bwa, miniwdl)

call-test / pytest_check (deeptools, sprocket)

call-test / pytest_check (deeptools, miniwdl)

call-test / pytest_check (fastp, sprocket)

call-test / pytest_check (fastp, miniwdl)

call-test / pytest_check (fastqc, sprocket)

call-test / pytest_check (fastqc, miniwdl)

call-test / pytest_check (flag_filter, sprocket)

call-test / pytest_check (flag_filter, miniwdl)

call-test / pytest_check (fq, sprocket)

call-test / pytest_check (fq, miniwdl)

call-test / pytest_check (gatk4, sprocket)

call-test / pytest_check (gatk4, miniwdl)

call-test / pytest_check (htseq, sprocket)

call-test / pytest_check (htseq, miniwdl)

call-test / pytest_check (kraken, sprocket)

call-test / pytest_check (kraken, miniwdl)

call-test / pytest_check (librarian, sprocket)

call-test / pytest_check (librarian, miniwdl)

call-test / pytest_check (md5sum, sprocket)

call-test / pytest_check (md5sum, miniwdl)

call-test / pytest_check (methylation, sprocket)

call-test / pytest_check (methylation, miniwdl)

call-test / pytest_check (mosdepth, sprocket)

call-test / pytest_check (mosdepth, miniwdl)

call-test / pytest_check (multiqc, sprocket)

call-test / pytest_check (multiqc, miniwdl)

call-test / pytest_check (ngsderive, sprocket)

call-test / pytest_check (ngsderive, miniwdl)

call-test / pytest_check (picard, sprocket)

call-test / pytest_check (picard, miniwdl)

call-test / pytest_check (qualimap, sprocket)

call-test / pytest_check (qualimap, miniwdl)

call-test / pytest_check (read_group, sprocket)

call-test / pytest_check (read_group, miniwdl)

call-test / pytest_check (sambamba, sprocket)

call-test / pytest_check (sambamba, miniwdl)

call-test / pytest_check (samtools, sprocket)

call-test / pytest_check (samtools, miniwdl)

call-test / pytest_check (star, sprocket)

call-test / pytest_check (star, miniwdl)

call-test / pytest_check (util, sprocket)

call-test / pytest_check (util, miniwdl)

R CI on: push

style

lint

Workflows Pull Check on: pull_request

import_syntax_check

docker_pull_check

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