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  1. flambe flambe Public

    Bayesian inference of fitness landscape architecture using Pyro.

    Python

  2. pyDiMSum pyDiMSum Public

    Python reimplementation of DiMSum: fast deep mutational scanning analysis (STEAM + WRAP)

    Python 1

  3. SpecificityStudio SpecificityStudio Public

    A benchmark dataset for understanding how different protein fitness models score and design variants of altered specificity

    Jupyter Notebook

  4. GaudetLab/pyDDM GaudetLab/pyDDM Public

    Code to build and analyze distance difference matrices (DDMs) to compare protein conformations. Also contains all code associated with "They all rock: A systematic comparison of conformational move…

    Jupyter Notebook 1 1