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README: modernize structure (logo, Quick start, MetaGraph Online) #635

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README: modernize structure (logo, Quick start, MetaGraph Online) #635

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3086e4b
updated README
karasikov May 20, 2026
3b02c61
README: add minimal CLI walkthrough and restore advanced recipes
karasikov May 20, 2026
ed851a9
README: lead with outcomes, add pipeline diagram, surface buried feat…
karasikov May 21, 2026
40c3806
README: correctness pass + simplify Features/Install
karasikov May 21, 2026
726d5a8
README: clarify 50+ PB framing; minor icon/header tweaks
karasikov May 21, 2026
fa38c83
README: restore install-method badges; tweak Index your data icon
karasikov May 21, 2026
fdb3c5a
README: fix install-from-source badge anchor
karasikov May 21, 2026
433231e
README: rewrite Minimal example with simpler test data
karasikov May 21, 2026
5abaec9
README: use --query-mode matches in Minimal example
karasikov May 21, 2026
533a9eb
README: clarify alignment modes (issue #636); restore Custom alphabet…
karasikov May 21, 2026
9e55f60
README: restore k-mer counts/coordinates as Features bullets; reorder
karasikov May 21, 2026
b2a9b4c
up
karasikov May 28, 2026
bdae479
up
karasikov May 28, 2026
1771939
README: consolidate badges and restore developer notes inline
karasikov May 28, 2026
c4fecea
README: final polish — AWS Open Data pointer, icons/wording, consiste…
karasikov May 28, 2026
fb93baf
README: shrink header logo to width=260
karasikov May 28, 2026
98d2c67
README: collapse Minimal example; link docs Quick start for index con…
karasikov May 28, 2026
9b7341b
README: restore "extensible by design" point to Under the hood
karasikov May 28, 2026
20dcdbd
README: de-LLM prose, itemize "other ways", theme-aware SVG logo
karasikov May 30, 2026
d9a8074
Update AUTHORS and COPYRIGHT
karasikov May 30, 2026
aca5635
README: add project title; soften dark-mode logo color
karasikov May 30, 2026
f21d54a
Fix header formatting in README.md
karasikov May 30, 2026
07e6f54
README: fix labels-delimiter note, drop --force-reinstall from pip step
karasikov Jun 12, 2026
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3 changes: 3 additions & 0 deletions AUTHORS
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Expand Up @@ -5,9 +5,12 @@ Metagraph was conceived and written by:
Andre Kahles

Further contributors/collaborators:
Oleksandr Kulkov
Daniel Danciu
Marc Zimmermann
Christopher Barber

Contributing students:
Sara Javadzadeh No
Jan Studeny
Thomas Zhou
2 changes: 1 addition & 1 deletion COPYRIGHT
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@@ -1,6 +1,6 @@
Metagraph is provided free of charge under the GPLv3 license:

Copyright (c) 2014-2019, Mikhail Karasikov, Harun Mustafa, Andre Kahles, Gunnar Raetsch
Copyright (c) 2014-2026, Mikhail Karasikov, Harun Mustafa, Oleksandr Kulkov, Andre Kahles, Gunnar Raetsch
(for further author information, please refer to the AUTHORS file)
All rights reserved.

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