Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
Accelerator
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
prody
/
ProDy
Public
Notifications
You must be signed in to change notification settings
Fork
181
Star
554
Code
Issues
15
Pull requests
21
Discussions
Actions
Projects
Wiki
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Discussions
Actions
Projects
Wiki
Security and quality
Insights
Fix parseMMCIF and fetchPDB to get CIF files
- #2126
#2126
Open
jamesmkrieger
wants to merge 9 commits into
prody:main
prody/ProDy:main
from
jamesmkrieger:fix_fetchPDB_cif
jamesmkrieger/ProDy:fix_fetchPDB_cif
Copy head branch name to clipboard
Conversation
Commits
9
(9)
Checks
Files changed
Open
Fix parseMMCIF and fetchPDB to get CIF files
#2126
jamesmkrieger
wants to merge 9 commits into
prody:main
prody/ProDy:main
from
jamesmkrieger:fix_fetchPDB_cif
jamesmkrieger/ProDy:fix_fetchPDB_cif
Copy head branch name to clipboard
Commits
Commits on May 8, 2025
add format to fetchPDB findPDB 2
jamesmkrieger
committed
e21169c
View commit details
Copy full SHA for e21169c
Browse repository at this point
replace ent with extension too
jamesmkrieger
committed
5b26726
View commit details
Copy full SHA for 5b26726
Browse repository at this point
Commits on Aug 20, 2025
Merge branch 'main' of https://github.com/prody/ProDy into fix_fetchPDB_cif
jamesmkrieger
committed
37944cb
View commit details
Copy full SHA for 37944cb
Browse repository at this point
get longSeq outside loop
jamesmkrieger
committed
d3c007e
View commit details
Copy full SHA for d3c007e
Browse repository at this point
add fetch pdb then cif test
jamesmkrieger
committed
ac98f5d
View commit details
Copy full SHA for ac98f5d
Browse repository at this point
add parseMMCIF 3o21 test as fixed by defining longSeq earlier
jamesmkrieger
committed
104244b
View commit details
Copy full SHA for 104244b
Browse repository at this point
magic number check for gzip content
jamesmkrieger
committed
b7aa585
View commit details
Copy full SHA for b7aa585
Browse repository at this point
Commits on Jul 28, 2026
Merge branch 'main' of github.com:prody/ProDy into fix_fetchPDB_cif
jamesmkrieger
committed
50242b8
View commit details
Copy full SHA for 50242b8
Browse repository at this point
use resolved format kwarg
jamesmkrieger
committed
419ab56
View commit details
Copy full SHA for 419ab56
Browse repository at this point
You can’t perform that action at this time.