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medaka model download #298

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Merged
aineniamh merged 1 commit into from
Jul 13, 2026
Merged

medaka model download #298

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3 changes: 2 additions & 1 deletion Dockerfile
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Expand Up @@ -14,7 +14,8 @@ RUN apt-get update -y && \
RUN git clone https://github.com/polio-nanopore/piranha.git && \
cd /data/piranha && \
mamba install conda -n base -c conda-forge -c defaults -c bioconda && \
mamba env create -f /data/piranha/environment.yml
mamba env create -f /data/piranha/environment.yml && \
medaka tools download_models

# Make RUN commands use the new environment:
SHELL ["conda", "run", "-n", "piranha", "/bin/bash", "-c"]
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