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Sync upstream morluto/rea main (38 commits, 8c857ce5) - #15

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Upstream sync reviewed 2026-11-03 21:00 CST: +38 commits, 201 files, +7296/-513. Includes workflow files: .github/workflows/ci.yml, real-binary-layout.yml, website-check.yml, website-pages.yml. Samples: feat(evidence) discover missing Evidence links (morluto#8633), fix(doctor) provider settings (morluto#8645), fix(javascript) static facts after semantic results (morluto#8648). Fork has no local customizations. PR head follows upstream tip at merge time.

kaoru0822-kitauji and others added 30 commits November 2, 2026 05:14
…records (#8633)

* feat(evidence): discover missing Evidence links without transferring records

An agent could only learn that a retained record's source was absent by reading
complete records or by having a downstream analysis refuse. The summary said
nothing about links, and complete-record retention was easy to mistake for
source closure.

- Add detail: links to get_evidence_bundle and CLI inspect-evidence-bundle:
  paged link rows with retained or missing status and no record payloads, for
  selected records against the whole session or file.
- Add retained-closure traversal, the walk composed workflows require, reporting
  complete or incomplete. Direct reads make no closure claim.
- Count direct and missing direct links in the summary.

Fixes #8454

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(evidence): count a repeated Evidence link once in every delivery

The Evidence schema does not deduplicate evidence_links, so the summary counted
a repeated link twice while link rows and counts reported it once. Both now read
one helper for a record's distinct direct links.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(evidence): validate link delivery against the advertised schemas

The test never called tools/list, so neither the shared validator nor the MCP
client checked its replies against what each profile advertises. A schema that
rejected the links result could have passed. Fetch the advertised definition and
validate every request and reply against it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
…record (#8645)

* fix(doctor): report provider settings a client registration does not record

Provider checks read the terminal running doctor, so a registration with no
env block looked ready while its server reported not_configured. Compare what
an available provider relied on with the registration's own file and report the
setting names in a non-blocking registration_environment check. The client's
effective environment stays unknown, so health and the exit status are unchanged.

Fixes #8202

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(doctor): write the Cordis fixture at its literal path

The test resolved the path through supportedClients, whose default environment
argument CodeQL traces to the fixture's writes even though the test passes {}.
It only needed the path, so spell it like the other fixtures in this file and
drop a leftover directory it never used.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
…ent budget (#8648)

Static checkpoints were admitted against the same budget as semantic and
application results, half of the parent's free heap. Once those charges used
it, the next checkpoint stopped the analysis and every remaining source lost
its static facts, with most of the parent heap still free.

Semantic and application results still stop at that budget. Static checkpoints
may now continue to three quarters of the free heap while the live heap also
has room for another copy of what it holds. Without that room, admission falls
back to the result budget. The live condition is needed because the limit V8
reports counts young-generation capacity that retained objects cannot use:
without it, the parent aborted on heap exhaustion at small heap limits.

Reserved relationships are given up only when the larger share runs short. A
stop still fails with a typed error, which now reports the limit that applied,
what was available, the live heap in use and what the checkpoint needed.

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
* fix(debugger): let REA exit when a debugger could not be stopped

`rea debug-with-gdb` and `rea debug-with-rizin` printed cleanup_incomplete
and set exit status 1, but the retained child and its pipes kept the event
loop alive, so the process never exited. A stdio MCP server whose client
disconnected hung the same way.

closeOwnedDebuggerSessions is the owner both managers finish through. It now
unreferences retained sessions, as supervised providers already do after
incomplete cleanup, restores the references on retry, and names the retained
process IDs. The one-shot commands report those IDs, since no later command
can retry. Debugger ownership, signals and detach behavior are unchanged.

GDB cleanup requests also no longer hold the host until their 120 s command
deadline, because cleanup already bounds its own wait.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(debugger): name retained debuggers when an MCP server shuts down

An MCP server that exits with a retained debugger logged only "REA provider
cleanup failed" and "could not close cleanly", so nothing named the process
left for the caller to check. The PIDs were on OwnedDebuggerCleanupError, but
each shutdown reporter read only the outer aggregate's message, and the debug
failure_cause description dropped the field too.

The failure type now lives in its own dependency-free module with one reader
that walks composed failures. The shutdown report, the server's onclose log,
the debug description and the one-shot CLI all use it, and the shutdown report
writes the same remediation the CLI returns.

The fake debuggers now model each request exactly, with real reply shapes, and
a request they do not model fails the test.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(debugger): compare retained-debugger guidance with its formatter

The new checks froze the wording "Check process ... and its target".
docs/testing.md asks guidance checks to compare with the owning formatter,
alongside independent checks of the facts. They now do, and each still proves
the process ID is named, because a formatter comparison alone would pass if the
formatter dropped it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
…8654)

* fix(native): stop calling an off-screen window absent

The native UI helper looked up its selected window with
`.optionIncludingWindow`, which returned nothing while that window was off
screen. An existing window owned by the selected process was reported as
`window-mismatch`, before any permission check, so the verifier could not reach
its permission boundary. Select from all windows instead; absent and foreign
windows still fail.

The verifier's changed-bytes check also read `error.message`, but since
cc90771 a selection failure carries its helper code in `error.issues`, so the
check could not pass. Read the issue. Together these let the permissions lane
complete on main.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(native): own UI test processes from the moment they launch

The off-screen test registered cleanup only after parsing the ready record, so a
startup failure left `/usr/bin/open` and its app running. The lane test killed
only the verifier on a timeout, leaving its launcher and detached fixture alive
until they expired.

Register the off-screen owner immediately after the launch; the app inherits the
run token, so the sweep needs no ready record. In the lane test, every stand-in
records itself and leaves on one release the test's cleanup awaits.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
* feat(kuna): verify release 1.989

* fix(kuna)!: separate verification policy from analysis identity

* docs(kuna): show historical evidence recovery

* test(kuna): cover verification warnings through MCP
* fix(mcp): qualify string byte-read guidance

* fix(mcp): avoid implying complete string references
* fix(kuna): qualify parallel project pseudocode

* test(kuna): cover parallel caveats through MCP
* fix(javascript): reconcile Node targets with entry assets

* test(inspector): read reconciled evidence payload

* Update tests/boundary/inspector/javascriptRuntimeNodeTarget.test.ts

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

* test(inspector): read the workflow evidence payload

* Update tests/boundary/inspector/javascriptRuntimeNodeTarget.test.ts

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

* test(javascript): restore Evidence workflow result access

---------

Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
…8711)

* feat(binary-layout): admit ELF64 AArch64 and name the refused host

inspect_binary_layout refused every AArch64 ELF, and on a non-x64 host the
refusal read "supports Linux x64 only", which looked like a target refusal
(#8709 ran on arm64 WSL and suspected an e_machine check).

The pwntools adapter now admits little-endian ELF64 AArch64 EXEC/DYN/REL
objects alongside the existing profiles, pwntools must report aarch64/64/
little, and the Evidence subject names arm64. The host refusal now names the
detected platform/arch and says the target was not read; the host check
itself is unchanged.

verify:binary:layout cross-compiles an AArch64 executable and relocatable
object (never executed) and checks sections, symbols and relocations
against GNU readelf, decoding ELF64 r_info as a 32-bit type under a 32-bit
symbol index. The real-binary-layout workflow installs the toolchain.

Refs #8709

* test(binary-layout): refuse RISC-V as the unsupported machine and assert the host refusal path

verify:binary:layout used e_machine 183 (AArch64) as its unsupported
target, which this branch now admits; use EM_RISCV (243) instead.

The unsupported-host provider test now asserts the refusal names this
host's platform/arch and says the target was not read, so reverting the
decoder to the old message fails it.
fix(native): keep UI handler offsets distinct from method records
* fix(mcp): guide target recovery for scoped tools

* test(mcp): cover unscoped target recovery

* fix(mcp): warn before scoped session restart

* refactor(mcp): own scoped target recovery guidance

* fix(mcp): include unknown history in restart guidance
* fix(kuna): give actionable lookup recovery

* fix(kuna): keep lookup advice operation neutral

* style(kuna): apply repository formatter
* fix(kuna): keep timeout recovery from changing workers

* test(kuna): verify timeout recovery with real provider
Application analysis preserves the complete literal request endpoint,
including the empty string, and the event seed already accepts a
retained empty name. The endpoint seed still required a non-empty
value, so trace-javascript-semantics refused to select a retained ""
endpoint with invalid_request.

The endpoint seed now accepts any string and keeps exact matching.
Boundary-field seeds keep their minimum because boundary nodes are only
produced from method names.

Found while fixing #6458; the event half of that report landed in
cf5e4f6.

Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>
Remove the incomplete Choose a guide duplicate that omitted kernel-modules.md so the docs index keeps one complete native-inspection entry.

Fixes #7405
Chrome DevTools HAR exports declare creator WebInspector 537.36 and
report IPv6 serverIPAddress values in brackets: its HAR writer strips
the port with lastIndexOf(':') but its bracket removal,
replace(/\[\]/g, ''), only matches the literal pair '[]'. The pinned
schema then rejects the whole archive at the first such entry.

Extend the existing Playwright 1.58.2 adaptation to this declared
producer. Brackets are removed only in the disposable validation copy
and only around a valid IPv6 literal; reported spellings are retained
and the per-entry limitation names the declared producer.
Retain detected manual connectors and explicit selection while excluding unsupported formats from automatic setup readiness. Fixes #7522.
* fix(verification): compare retained Ghidra function evidence

* test(verification): require the exact missing Evidence refusal
BeqaKs and others added 8 commits November 3, 2026 14:48
* fix(flutter): read unlabeled Dart Version::String() from engines

Release libflutter.so embeds Dart's Version::String() without the
standalone VM's "Dart VM version:" label, so identify_flutter_build left
dart_version null on real APKs. Accept that channel-bearing form beside
the labeled scanner path.

* fix(flutter): qualify unlabeled version candidates

---------

Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Preserve the twenty-entry diagnostic prefix and report the full count,
omitted count and truncation fact at the owning report projection. Document
the recovery limitation and cover the public HAR-to-comparison workflow.

Fixes #7621

Validation: 121 source tests; three selected CLI regressions (five other
cases unselected); nine README conformance cases; full --noEmit typecheck;
documentation facts/metadata/schema/licenses; module boundaries and
architecture guards. VitePress rendering is blocked by Windows EPERM on its
worktree-local Vue symlink. Full aggregate coverage remains for Draft CI.

Independent code review: APPROVE, relayed by parent task
01a17716-6299-75fe-87e9-b0398b8c9019. Trigger: >=50 changed lines / >=3 files.
Reviewed tree: ba964ef
Reviewed full-index patch SHA256:
972dcfc219dd7b9606175b1848068f92210fa3f7d0a8a244c1ac7ce296ae32d9
* fix(reference): Exclude Git pointer files from source identities

Match .git pointer files in the default import policy after the existing
directory rules, preserving ordinary-checkout exclusion provenance and Git
HEAD discovery. Cover linked-worktree identities, repeated imports, nested
metadata, similarly named source files, and configured-secret precedence.

Independent review: parent independent review APPROVE for Draft CI on patch
61bddf108952c77858fa71c333b4bb8a05ab33e8b03f5c6bccd879cd19c7c379 and source
tree 2d2372a. Review triggers: delegated
shipping output, source inventory/file I/O behavior, and more than 50 lines.

Validation: npm run check passed with Node 24.22.1/npm 11.16.0 on Windows;
tracked Vitest regression 1 passed/3 Windows skips; test discovery passed.
Eight offline Linux production imports passed on cached Node 22.19.0 as
supporting evidence only. Pinned Linux/macOS Vitest cases await hosted CI.

Fixes #7551

* test(reference): Isolate worktree fixtures from host Git settings

Route every fixture Git command through one wrapper with a filtered child
environment, owned empty global config/template/hook paths, and no system
config reads. Keep resource cleanup under the existing temporary owner.
These settings are scoped to synthetic child processes; host Git settings
and this repository's commit/push checks are unchanged.

Targeted independent review: parent review APPROVE on patch
4be9a2af3e40edac3d64f687170e966a87fcf762f1877f2c55016e120bcd90ac and tree
a2ba91e. The reviewer confirmed the native
proof helper hash, complete fixture command coverage, and owned cleanup.
Review triggers: delegated follow-up and fixture file/process boundaries.

Validation: npm run check:fast passed; targeted Vitest 1 passed/3 native
Windows skips. On pinned Node 24.22.1, the actual helper rejects inherited
hooks/templates while commit, worktree creation, HEAD and status checks pass.
The unisolated control copies the injected template and its commit fails.

Refs #7551
* fix(browser): keep negative script columns Chrome reports

Chrome reported a Debugger.scriptParsed event with startColumn -60 and
endColumn -15 for an inline script in WordPress's helper frame. CDP declares
these columns as plain integers, but REA's admission required min(0), so one
script failed the whole observe-web-execution run with unreadable_output.

CDP resource columns now share one representation, cdpResourceColumnSchema,
for script start/end columns, initiator call frames, parser initiators and
event listeners. Positions on a script's first line include its start column,
so keeping the reported values keeps the documented script-relative
conversion consistent. The domain contract and web runtime docs state that a
negative column does not locate a column in the resource.

Fixes #8674

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(browser): apply the CDP column policy to passive capture

inspect_web_page and discover_webmcp_tools still read CDP columns through
cdpSourceCoordinates, whose own >= 0 check turned a negative column into
null and reported invalid_protocol_value. WebMCP discovery also dropped the
tool's whole registration_source.

cdpResourceColumnSchema now lives with the domain's CDP observation schemas.
Runtime admission, the passive coordinate helper and the runtime, console,
initiator and WebMCP output schemas all use it. Lines keep their
non-negative rule.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Place the Join us on Discord button under each hero's website, guides,
and showcases line. The invite and alt text stay the same.
@panzer13
panzer13 merged commit e701e84 into panzer13:main Nov 3, 2026
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