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@clingen-data-model ClinGen Data Platform

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    102 repositories

    • clingen-gene-tracker

      Public
      Web based gene curation workflow tracking application
      PHP
      •1•3•12•0•Updated Oct 23, 2026Oct 23, 2026

    • community-curation

      Public
      PHP
      •0•3•0•10•Updated Oct 23, 2026Oct 23, 2026

    • gpm

      Public
      ClinGen Expert Panel Management System
      PHP
      •2•3•2•17•Updated Oct 23, 2026Oct 23, 2026

    • clinvar-gkm

      Public
      dataform project with pipelines to transform clinvar to gks standards
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•2•4•0•Updated Oct 23, 2026Oct 23, 2026

    • w3id.org

      Public
      Website source code for w3id.org.
      JavaScript
      •2.1k•0•0•0•Updated Oct 23, 2026Oct 23, 2026

    • clinvar-gkm-parquet

      Public
      Build queryable Parquet tables from ClinVar-GKM JSON bundles (derived convenience; independently versioned)
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 23, 2026Oct 23, 2026

    • cur-ai-ss

      Public
      Curator AI Assistant
      Python
      •
      MIT License
      •2•4•0•1•Updated Oct 22, 2026Oct 22, 2026

    • laravel-schedule-ketchup

      Public
      PHP
      •
      MIT License
      •0•0•0•0•Updated Oct 22, 2026Oct 22, 2026

    • clinvar-ingest-bq-tools

      Public
      ClinVar ingest BiqQuery tools
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•3•Updated Oct 21, 2026Oct 21, 2026

    • cgwi-php-helm

      Public
      Helm chart for ClinGen Workflow Infrastructure php apps
      Go Template
      •0•0•1•0•Updated Oct 21, 2026Oct 21, 2026

    • cgwi-php

      Public
      ClinGen Workflow Infrastructure base PHP images
      Dockerfile
      •
      MIT License
      •0•0•2•0•Updated Oct 21, 2026Oct 21, 2026

    • clinvar-ingest

      Public
      Python
      •
      Apache License 2.0
      •0•3•22•1•Updated Oct 20, 2026Oct 20, 2026

    • website-clinicalgenome-search

      Public
      SEARCH V4 :: The aim of the project is to integrate ClinGen's internal data services and public external data services around a common user experience to ensure…
      phplaravelcomposer
      phplaravelcomposervariantsgenes
      PHP
      •3•4•0•20•Updated Oct 15, 2026Oct 15, 2026

    • genegraph-api

      Public
      GraphQL API representation of Genegraph managed data
      Clojure
      •
      MIT License
      •0•0•6•0•Updated Oct 8, 2026Oct 8, 2026

    • genegraph-framework

      Public
      Framework for stream based processing of events, with public API access built in
      Clojure
      •
      MIT License
      •0•0•3•0•Updated Oct 4, 2026Oct 4, 2026

    • svcv4-model

      Public
      Python
      •
      MIT License
      •3•7•11•0•Updated Sep 24, 2026Sep 24, 2026

    • architecture

      Public
      HCL
      •0•2•15•3•Updated Sep 3, 2026Sep 3, 2026

    • xldown

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 26, 2026Aug 26, 2026

    • genegraph-schema

      Public
      Schema for Genegraph applications
      Clojure
      •0•0•0•0•Updated Aug 23, 2026Aug 23, 2026

    • genegraph-frontend

      Public
      Frontend for genegraph-api
      Clojure
      •0•0•0•0•Updated Aug 23, 2026Aug 23, 2026

    • clinvar-this

      Public
      ClinVar Submission API Made Easy
      Python
      •
      MIT License
      •2•0•5•0•Updated Aug 14, 2026Aug 14, 2026

    • genegraph-gene-validity-sepio

      Public
      Transform and publish the Gene Validity SEPIO model to the data exchange and storage
      Clojure
      •
      MIT License
      •0•0•12•0•Updated Aug 11, 2026Aug 11, 2026

    • clinvar-curation-input-tool

      Public
      Chrome extension to allow curators to capture SCV data to a google sheet directly from clinvar website.
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 10, 2026Aug 10, 2026

    • clingen-phenopackets

      Public
      Code for transforming ClinGen-curated data to phenopackets
      Jupyter Notebook
      •0•0•1•0•Updated Aug 10, 2026Aug 10, 2026

    • clinvar-gk-python

      Public
      Project for reading and normalizing ClinVar variants into GA4GH GKS forms
      Jupyter Notebook
      •
      MIT License
      •0•0•4•0•Updated Jul 20, 2026Jul 20, 2026

    • clingen-architecture

      Public
      Records of design and decisions for ClinGen across activities
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Jul 16, 2026Jul 16, 2026

    • genegraph-base

      Public
      App for downloading supporting data files for Genegraph apps and advertising their availability on the Data Exchange.
      Clojure
      •
      MIT License
      •0•0•0•0•Updated Jun 22, 2026Jun 22, 2026

    • data-exchange-shared-json

      Public
      JSON schema utilized to share data from the curation interfaces into the Data Exchange. CONTAINS GENE EXPRESS JSON DATA
      0•1•2•0•Updated Jun 22, 2026Jun 22, 2026

    • clinpgx-gks

      Public
      A working repo to design and propose a working solution for representing Star Alleles in GA4GH GKS format.
      MIT License
      •0•0•0•0•Updated May 18, 2026May 18, 2026

    • clinvar-ep-reports

      Public
      Python script to generate ClinGen Expert Panel Excel reports from ClinVar FTP files.
      Python
      •0•0•1•0•Updated Feb 24, 2026Feb 24, 2026
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