Add propose_clades.py tooling to find clade designation candidates - #1205

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trvrb wants to merge 6 commits into

Commits on Aug 6, 2026

Add propose_clades.py tool for finding clade-designation candidates

trvrb
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claude
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31bedba
Add open vs GISAID data-source switch to propose_clades.py

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claude
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7e83b58
Judge clade thresholds by windowed Wilson lower bound, not the latest pivot

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claude
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cd370af
Add per-region Auspice verify links and alternative-demarcation mutation diffs

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claude
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efbf4d7
Designate-clades: all-nuc definitions, staging trial step, thorough PR

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claude
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4ca980e
Add --skip-regions to exclude specific regions from the dossier

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claude
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16fd447