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Add seqera:// NIO filesystem for Seqera Platform datasets #6946

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Add seqera:// NIO filesystem for Seqera Platform datasets #6946

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bbad0e0
first seqera fs implementation
jorgee Mar 11, 2026
b1d0620
removed unnecessary logs
jorgee Mar 17, 2026
ca9eb97
fixing incorrect paths when filename and empty seqera path
jorgee Mar 19, 2026
931960e
fix issues
jorgee Mar 19, 2026
ba46420
Refactor tower observer client
jorgee Mar 20, 2026
38420e1
add integration test
jorgee Mar 20, 2026
76cf74c
Merge remote-tracking branch 'origin/master' into 260310-seqera-datas…
jorgee Mar 27, 2026
a44e197
Merge remote-tracking branch 'origin/master' into 260310-seqera-datas…
jorgee Apr 7, 2026
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3 changes: 2 additions & 1 deletion modules/nf-commons/src/main/nextflow/file/FileHelper.groovy
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Expand Up @@ -362,7 +362,7 @@ class FileHelper {
return asPath(toPathURI(str))
}

static final private Map<String,String> PLUGINS_MAP = [s3:'nf-amazon', gs:'nf-google', az:'nf-azure']
static final private Map<String,String> PLUGINS_MAP = [s3:'nf-amazon', gs:'nf-google', az:'nf-azure', seqera:'nf-tower']

static final private Map<String,Boolean> SCHEME_CHECKED = new HashMap<>()

Expand All @@ -373,6 +373,7 @@ class FileHelper {
// find out the default plugin for the given scheme and try to load it
final pluginId = PLUGINS_MAP.get(scheme)
if( pluginId ) try {
log.debug "Detected required plugin '$pluginId'"
if( Plugins.startIfMissing(pluginId) ) {
log.debug "Started plugin '$pluginId' required to handle file: $str"
// return true to signal a new plugin was loaded
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6 changes: 5 additions & 1 deletion plugins/nf-tower/build.gradle
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Expand Up @@ -32,7 +32,8 @@ nextflowPlugin {
'io.seqera.tower.plugin.TowerFactory',
'io.seqera.tower.plugin.TowerFusionToken',
'io.seqera.tower.plugin.auth.AuthCommandImpl',
'io.seqera.tower.plugin.launch.LaunchCommandImpl'
'io.seqera.tower.plugin.launch.LaunchCommandImpl',
'io.seqera.tower.plugin.fs.SeqeraPathFactory'
]
}

Expand All @@ -57,6 +58,9 @@ dependencies {
compileOnly 'io.seqera:lib-httpx:2.1.0'
api 'io.seqera:lib-platform-oidc:0.1.0'

api('io.seqera:tower-api:1.121.0') {
exclude group: 'io.micronaut.servlet'
}
api "com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.21.1"
api "com.fasterxml.jackson.core:jackson-databind:2.21.1"

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