Feat/annotate design - #185

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mmolari wants to merge 29 commits into

feat/annotate-design

Commits on Jun 11, 2026

docs(design): add annotation-lifting manifesto
mmolari
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2c56bcd
feat(annotate): add internal Feature annotation model
mmolari
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56ab456
feat(annotate): add GFF reader
mmolari
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2d4a25e
feat(annotate): add GenBank reader
mmolari
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68aa077
feat(annotate): match annotation seqids to graph paths
mmolari
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aa52c0e
docs(annotate): add implementation notes for the annotation feature
mmolari
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6664e44
fix(annotate): tolerate blank lines in GFF input
mmolari
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2ce4ea8
test(annotate): add klebs graph + real annotation smoke tests
mmolari
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b8b37d7
docs(annotate): record real-data smoke-test findings
mmolari
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0ba31ff
test(annotate): cover GenBank join-collapse and unresolvable-bounds skip
mmolari
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efb5a96
refactor(annotate): drop GenBank support, GFF-only for v1
mmolari
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2a7462c
feat(annotate): add consensus_coords_from_node inverse coordinate helper
mmolari
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7d54687
test(annotate): cover shared-position del/ins tie-break in consensus_coords_from_node
mmolari
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f1c18e7

Commits on Jun 12, 2026