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Clarify HEST public benchmark protocol

Status: Open.

#141 In mahmoodlab/HEST;

· yubin-ai opened on May 21, 2026

Correcting error in pool_transcripts_xenium when pandas object

Status: Open.

#138 In mahmoodlab/HEST;

· AndrejPer opened on Apr 25, 2026

Error with valis-hest

Status: Open.

#119 In mahmoodlab/HEST;

· Kexin-xu-01 opened on Oct 13, 2025

Access to additional info. in xenium spatial data

Status: Open.

#118 In mahmoodlab/HEST;

· DabinJeong opened on Oct 2, 2025

Adding GrandQC Artefact Filtering

Status: Open.

#117 In mahmoodlab/HEST;

· Kexin-xu-01 opened on Sep 10, 2025

Incorporate Newer Foundation Models

Status: Open.

#116 In mahmoodlab/HEST;

· Kexin-xu-01 opened on Sep 8, 2025

"pip install" skips local_ckpts.json

Status: Open.

#115 In mahmoodlab/HEST;

· aowenson-imm opened on Sep 8, 2025

Dependency conflict with new xarray packages

Status: Open.

#113 In mahmoodlab/HEST;

· rushin682 opened on Aug 12, 2025

Xenium cell_id in transcripts and CellVit segmentation results

Status: Open.

#109 In mahmoodlab/HEST;

· Szym29 opened on Jun 14, 2025

Adapting SpatialData to naming restrictions for HEST samples

Status: Open.

#104 In mahmoodlab/HEST;

· rushin682 opened on Apr 27, 2025

st.save() error: only length-1 arrays can be converted to Python scalars

Status: Open.

#99 In mahmoodlab/HEST;

· katimbach opened on Apr 17, 2025

Loading raw Xenium data

Status: Open.

#97 In mahmoodlab/HEST;

· ekansh09 opened on Apr 2, 2025