Issues

• C++ compiler issues

  kundajelab/phantompeakqualtools#26 · Filter by author Nanderson246 opened on Apr 19, 2025

• single-end or paired-end

  kundajelab/phantompeakqualtools#24 · Filter by author rickbingpan opened on Dec 28, 2023

• Use phantompeakqualtools in CUT&Tag?

  kundajelab/phantompeakqualtools#23 · Filter by author Doctoryang90 opened on Dec 24, 2023
  1

• Negative Strand length

  kundajelab/phantompeakqualtools#22 · Filter by author varamhcu opened on Jun 3, 2022

• Peak Calling - Error when calculating statistical thresholds

  kundajelab/phantompeakqualtools#20 · Filter by author mw-neuro opened on Jun 21, 2021
  2

• How to deal with the data that have Phantom Peak Quality Tag -2/-1

  kundajelab/phantompeakqualtools#19 · Filter by author KunFang93 opened on Jun 14, 2020

• unable to save narrowpeak data

  kundajelab/phantompeakqualtools#16 · Filter by author ghost opened on Feb 26, 2020
  8

• Unable to install spp_1.14.tar.gz - boost version minimum?

  kundajelab/phantompeakqualtools#15 · Filter by author jjv5 opened on Oct 29, 2019
  2

• Use phantompeakqualtools in RIP-seq or MeRIP-seq?

  kundajelab/phantompeakqualtools#7 · Filter by author yuqingren opened on Jun 22, 2018

• need to load caTools

  kundajelab/phantompeakqualtools#6 · Filter by author mistrm82 opened on Mar 16, 2018

• multiple datasets

  kundajelab/phantompeakqualtools#5 · Filter by author olechnwin opened on Jul 10, 2017
  1

• another problem: Error: protect(): protection stack overflow

  kundajelab/phantompeakqualtools#3 · Filter by author crazyhottommy opened on Mar 24, 2017
  12

• phantompeakqual Error in names(cc) < names(otl) :attempt to set an attribute on NULL

  kundajelab/phantompeakqualtools#2 · Filter by author crazyhottommy opened on Mar 16, 2017
  16

• Adding flags to simulate SET from PET bams in lines 448-450 (run_spp.R)

  kundajelab/phantompeakqualtools#1 · Filter by author sitag opened on Feb 25, 2017