Massive PR to merge all the clodius changes#164

Merged

pkerpedjiev merged 37 commits into

kerpedji/rhodius

Mar 25, 2026

Commits on May 3, 2025

Commits on Mar 1, 2026

Commits on Mar 9, 2026

Update reference to s3sqlite to sosqlite
pkerpedjiev
committed

Commits on Mar 10, 2026

Commits on Mar 15, 2026

Add regions.valid.bed.gz and regions.spaces.bed; document LFS workflow

pkerpedjiev
and
claude
committed
fix: handle null CIGAR strings and pandas 3.x integer indexing

pkerpedjiev
and
claude
committed

Commits on Mar 17, 2026

Fixes to use the latest oxbow
pkerpedjiev
committed

Commits on Mar 25, 2026