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Add remaining missing terms from TiM 2025. #60

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Merged
gouttegd merged 1 commit into from
Jun 23, 2026
Merged

Add remaining missing terms from TiM 2025. #60

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99 changes: 99 additions & 0 deletions src/ontology/fbbi-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -673,6 +673,16 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100015>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100016>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100017>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100018>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100019>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100020>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100021>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100022>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100023>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100024>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100025>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100026>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100027>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_00100028>))
Declaration(Class(<http://purl.obolibrary.org/obo/FBbi_root_00000000>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/FBbi_00000346>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
Expand Down Expand Up @@ -6642,6 +6652,95 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100018> "optical anisotropy")
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100018> <http://purl.obolibrary.org/obo/FBbi_00000590>)

# Class: <http://purl.obolibrary.org/obo/FBbi_00100019> (fluorescent protein derived from Branchiostoma)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/FBbi_00100019> "visualization of fluorescent protein derived from Branchiostoma")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/FBbi_00100019> <https://orcid.org/0000-0002-6095-8718>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/FBbi_00100019> "2026-06-23T14:42:00Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100019> "fluorescent protein derived from Branchiostoma")
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100019> <http://purl.obolibrary.org/obo/FBbi_00000405>)

# Class: <http://purl.obolibrary.org/obo/FBbi_00100020> (green fluorescent protein from Branchiostoma)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/FBbi_00100020> "visualization of green fluorescent protein from Branchiostoma")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/FBbi_00100020> <https://orcid.org/0000-0002-6095-8718>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/FBbi_00100020> "2026-06-23T14:44:18Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100020> "green fluorescent protein from Branchiostoma")
EquivalentClasses(<http://purl.obolibrary.org/obo/FBbi_00100020> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/FBbi_00100007> <http://purl.obolibrary.org/obo/FBbi_00100019>))

# Class: <http://purl.obolibrary.org/obo/FBbi_00100021> (mNeonGreen)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00100021> "A visualization method that detects proteins labeled with the mNeonGreen fluorescent protein tag from Branchiostoma lanceolatum.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/FBbi_00100021> "visualization of mNeonGreen")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/FBbi_00100021> <https://orcid.org/0000-0002-6095-8718>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/FBbi_00100021> "2026-06-23T14:45:44Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100021> "mNeonGreen")
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100021> <http://purl.obolibrary.org/obo/FBbi_00100007>)
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100021> <http://purl.obolibrary.org/obo/FBbi_00100019>)

# Class: <http://purl.obolibrary.org/obo/FBbi_00100022> (Cy3B)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00100022> "A visualization method that detects a probe conjugated to a Cy3B label.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/FBbi_00100022> "visualization of Cy3B")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/FBbi_00100022> <https://orcid.org/0000-0002-6095-8718>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/FBbi_00100022> "2026-06-23T14:50:01Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100022> "Cy3B")
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100022> <http://purl.obolibrary.org/obo/FBbi_00000455>)

# Class: <http://purl.obolibrary.org/obo/FBbi_00100023> (HiLyte647)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00100023> "A visualization method that detects a probe conjugated to a HiLyte647 label.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/FBbi_00100023> "visualization of HiLyte647")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/FBbi_00100023> <https://orcid.org/0000-0002-6095-8718>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/FBbi_00100023> "2026-06-23T14:51:00Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100023> "HiLyte647")
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100023> <http://purl.obolibrary.org/obo/FBbi_00000455>)

# Class: <http://purl.obolibrary.org/obo/FBbi_00100024> (SR2200)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "doi:10.21769/BioProtoc.1935") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00100024> "A visualization method that detects the SR2200 dye, typically used to stain cell walls.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/FBbi_00100024> "visualization of SR2200")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/FBbi_00100024> <https://orcid.org/0000-0002-6095-8718>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/FBbi_00100024> "2026-06-23T14:56:22Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100024> "SR2200")
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100024> <http://purl.obolibrary.org/obo/FBbi_00000112>)

# Class: <http://purl.obolibrary.org/obo/FBbi_00100025> (photobleaching)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00100025> "A method that images the photobleaching of a fluorophore.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/FBbi_00100025> "visualization of photobleaching")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/FBbi_00100025> <https://orcid.org/0000-0002-6095-8718>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/FBbi_00100025> "2026-06-23T15:01:49Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100025> "photobleaching")
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100025> <http://purl.obolibrary.org/obo/FBbi_00000270>)

# Class: <http://purl.obolibrary.org/obo/FBbi_00100026> (phototoxicity)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00100026> "A method that images the phototoxicity of a fluorophore.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/FBbi_00100026> "visualization of phototoxicity")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/FBbi_00100026> <https://orcid.org/0000-0002-6095-8718>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/FBbi_00100026> "2026-06-23T15:02:37Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100026> "phototoxicity")
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100026> <http://purl.obolibrary.org/obo/FBbi_00000270>)

# Class: <http://purl.obolibrary.org/obo/FBbi_00100027> (adherent live cells)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00100027> "A sample preparation method allowing the imaging of adherent living cells.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/FBbi_00100027> "preparation of adherent live cells")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/FBbi_00100027> <https://orcid.org/0000-0002-6095-8718>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/FBbi_00100027> "2026-06-23T15:05:47Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100027> "adherent live cells")
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100027> <http://purl.obolibrary.org/obo/FBbi_00000001>)

# Class: <http://purl.obolibrary.org/obo/FBbi_00100028> (stably transfected cells)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00100028> "A sample preparation method allowing the image of stably transfected cells.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/FBbi_00100028> "preparation of stably transfected cells")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/FBbi_00100028> <https://orcid.org/0000-0002-6095-8718>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/FBbi_00100028> "2026-06-23T15:14:54Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100028> "stably transfected cells")
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100028> <http://purl.obolibrary.org/obo/FBbi_00000001>)

# Class: <http://purl.obolibrary.org/obo/FBbi_root_00000000> (method involved in biological imaging)

AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/FBbi_root_00000000> "image")
Expand Down
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