Flash v2 #137

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hypnopump wants to merge 92 commits into

dptech-corp:mainfrom

hypnopump:hypnopump/flashattn2

Commits on Aug 2, 2022

Commits on Aug 3, 2022

add the description about downloading Uni-Fold pretrained model parameters (#11)
BaozCWJ
authored
add script for benchmarking & benchmark results (#10)
guolinke
authored

Commits on Aug 5, 2022

Commits on Aug 6, 2022

Commits on Aug 9, 2022

Commits on Aug 10, 2022

Hermite (#17)
ZiyaoLi
authored

Commits on Aug 12, 2022

Commits on Aug 13, 2022

Commits on Aug 16, 2022

correct the denominator of average memory in benchmark; fix the tri_mul_in/out in template when chunked inference (#29)
BaozCWJ
authored

Commits on Aug 18, 2022

Commits on Aug 21, 2022

update bioRxiv url
guolinke
authored

Commits on Aug 22, 2022

optimize the memory efficiency for Inference (#32)

BaozCWJ
and
guolinke
authored

Commits on Aug 24, 2022

reduce memory cost in multimer inference (#33)

guolinke
and
BaozCWJ
authored

Commits on Aug 25, 2022

Commits on Aug 26, 2022

Commits on Aug 31, 2022

swap case study (#39)
ZiyaoLi
authored

Commits on Sep 1, 2022

add the automatic settings of block size for various lengths of prediction (#38)
BaozCWJ
authored

Commits on Sep 16, 2022

change the download source of uf symmetry parameters to google drive (#51)
BaozCWJ
authored

Commits on Sep 22, 2022

Refine colab notebook (#52)

ZiyaoLi
and
guolinke
authored

Commits on Sep 27, 2022

add the default chains.txt for single-chain fasta (#54)
BaozCWJ
authored

Commits on Oct 10, 2022

change default model name (#61)
ZiyaoLi
authored

Commits on Oct 19, 2022

move model parameters to github release (#64)
guolinke
authored

Commits on Oct 29, 2022

fix uf-symmetry wget url (#68)
ZiyaoLi
authored

Commits on Nov 1, 2022

skip download af params (#70)
ZiyaoLi
authored

Commits on Nov 8, 2022

refine colab notebook (#72)
ZiyaoLi
authored

Commits on Nov 15, 2022

Add documentation about the full dataset download (#75)
guolinke
authored

Commits on Nov 21, 2022

refine cmd line for model names (#76)
guolinke
authored

Commits on Dec 1, 2022

Commits on Dec 12, 2022

add script for the evaluation (#82)
guolinke
authored

Commits on Jan 6, 2023

add script for label extraction (#89)
teslacool
authored

Commits on Jan 12, 2023

fix type after model.float() (#92)
teslacool
authored

Commits on Feb 15, 2023

update get assembly from mmcif (#96)
teslacool
authored

Commits on Mar 3, 2023

add dataset download via Volcengine (#103)

guolinke
and
ZiyaoLi
authored

Commits on Mar 24, 2023

Update unifold.ipynb (#109)
ZiyaoLi
authored

Commits on Apr 11, 2023

add symmetry utils to process input structures (#110)
ZiyaoLi
authored

Commits on May 9, 2023

fix import libmsym (#117)
ZiyaoLi
authored

Commits on May 11, 2023

Commits on Jun 12, 2023

add alphafold v3 param parse & config (#122)
ZiyaoLi
authored

Commits on Jun 19, 2023

correct load v3 (#125)
teslacool
authored

Commits on Oct 21, 2023

adding flash v2 torch for mask, custom for bias
hypnopump
committed

Commits on Dec 21, 2023