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Modernize dependencies, tests, and Python support. - #221

Merged
sdhutchins merged 7 commits into
devfrom
dedupe
Jul 14, 2026
Merged

Modernize dependencies, tests, and Python support.#221
sdhutchins merged 7 commits into
devfrom
dedupe

Refactor data management to use updated config import and add unit te…

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Codecov Report

❌ Patch coverage is 92.45283% with 4 lines in your changes missing coverage. Please review.
⚠️ Please upload report for BASE (dev@f2fcd35). Learn more about missing BASE report.
✅ All tests successful. No failed tests found.

Files with missing lines Patch % Lines
OrthoEvol/Tools/sge/sgejob.py 0.00% 2 Missing ⚠️
OrthoEvol/Manager/biosql/biosql.py 80.00% 1 Missing ⚠️
OrthoEvol/Manager/database_management.py 50.00% 1 Missing ⚠️
Additional details and impacted files
@@          Coverage Diff           @@
##             dev     #221   +/-   ##
======================================
  Coverage       ?   37.90%           
======================================
  Files          ?       70           
  Lines          ?     4327           
  Branches       ?        0           
======================================
  Hits           ?     1640           
  Misses         ?     2687           
  Partials       ?        0           

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