CRUK Cambridge Institute - Bioinformatics Core

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1. MGA MGA Public archive

   The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.

   Java 24 1

2. rascal rascal Public

   R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of cancer samples.

   R 12 4

3. clarityclient clarityclient Public

   A Java client for working with Genologics' REST API.

   Java 5 4

4. ampliconseq ampliconseq Public

   Variant calling pipeline for amplicon sequencing data

   R 5 1

5. PlateLayout PlateLayout Public

   Plate randomistation using R

   R 4 2

6. camcAPP camcAPP Public

   shiny app to explore various prostate cancer datasets

   R 3 1