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WIP: COMP: Clazy static analysis fixes : Many combined fixes needing to be separate PR's - #1372

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WIP: COMP: Clazy static analysis fixes : Many combined fixes needing to be separate PR's#1372
hjmjohnson wants to merge 20 commits into
commontk:masterfrom
BRAINSia:apply_clazy_skills

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@hjmjohnson

@hjmjohnson hjmjohnson commented Mar 23, 2026

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Purpose

This branch demonstrates systematic application of clazy static analysis to CTK, using Claude Code AI-assisted skills developed at:

This branch is used to identify clazy warnings and test failures. Fixing one item at a time requires an ordering and dependence on outstanding PRs. Use this branch to demonstrate where this effort is going.

https://github.com/hjmjohnson/CTK-claude-skills

The primary motivation is improving CTK correctness, performance, and Qt6 portability for the benefit of 3D Slicer and the wider CTK community.

Current test results (apply_clazy_skills branch)

Qt5 Qt6
Passed 275/275 (100%) 253/254 (99.6%)
Disabled 5 (modal dialog hangs) 1

Open PRs — ready for review

Not yet extracted as PRs (on apply_clazy_skills branch only)

  • BUG: Fix vtkLightBoxRendererManagerTest1 SEGFAULT and image threshold
  • BUG: Handle set_edit_string command in ctkMenuComboBoxEventPlayer
  • BUG: Skip covered-widget grab check on software renderers
  • BUG: Fix ctkVTKMagnifyViewTest2 baseline comparison failures
  • BUG: Fix ctkWorkflowWidgetTest1/2 failures on Qt6 (QEventLoop fix)
  • BUG: Fix ctkVTKMagnifyViewTest2 failures on Qt6 (QEventLoop fix)
  • BUG: Disable QT_FATAL_WARNINGS for CTKPluginFrameworkAppTests on Qt6
  • STYLE: Fix emit keyword placement on signal calls

AI-assisted development context

All fixes were generated using the CTK-claude-skills skill set:

Skill Role
/clazy-check Runs clazy-standalone to identify warnings by category
/clazy-fix Fixes one check end-to-end: reads clazy docs, edits source, rebuilds, tests, commits

🤖 Generated with Claude Code

@hjmjohnson

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@jamesobutler I thought you might find this interesting. I have been practicing my skill building with claude code at https://github.com/hjmjohnson/CTK-claude-skills. and have been using CTK as a test bed. There are several of these commits that could be cherry-picked and easily reviewed independent of this commit.

If you have inline comments to make, I'll use do a little more work trying to make some of this useful, but the primary intent was a learning exercise in developing claude-code skills.

Comment thread Testing/Temporary/LastTest.log Outdated
Comment thread Testing/Temporary/CTestCostData.txt Outdated
Comment thread Libs/Visualization/VTK/Widgets/ctkVTKScalarsToColorsView.h Outdated
Comment thread Libs/Visualization/VTK/Widgets/Testing/Cpp/ctkVTKScalarsToColorsViewTest2.cpp Outdated
Comment thread Libs/PluginFramework/ctkPluginStorageSQL.cpp

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Comment thread Libs/Widgets/ctkFontButton.cpp Outdated
Comment thread CMakeExternals/ITK.cmake
Comment thread Libs/Core/ctkErrorLogAbstractModel.cpp
Comment thread Libs/Core/ctkUtils.cpp
@hjmjohnson

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Addressed review comments with a force-push to this branch:

  1. Removed Testing/Temporary artifacts from commit 0b6a7090 (previously 634c11c7). The CTestCostData.txt and LastTest.log files were accidentally committed. Added Testing/Temporary/ to .gitignore to prevent recurrence.

  2. Reverted whitespace-only changes in ctkVTKScalarsToColorsView.h — these were unrelated formatting changes (pointer spacing) that snuck into the moc-types commit.

  3. Renamed STYLE:PERF: for two performance-oriented commits:

    • 1726881c: QMap→QHash for pointer keys (O(log n)→O(1) lookup)
    • 2a69bb83: non-POD global statics → Q_GLOBAL_STATIC (deferred init, thread-safe)
  4. Squashed the COMP (check return value) + PERF (static QRegularExpression) commits touching the same ITK test file into a single COMP+PERF: commit (b02607a2).

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Status Update — 2026-03-28

Rebased on: upstream/masterorigin/fix/issue-1314 (PR #1314)

Test Results (post-rebase)

Build Total Passed Failed
Qt6 (6.11.0) 242 222 20
Qt5 (5.15.18) 255 234 21

All failures are pre-existing (headless macOS ARM64 environment: no GPU, no display, no DICOM server):

  • OpenGL/VTK SEGFAULTs (no display)
  • DICOM network tests (no server, or port conflicts from sequential runs)
  • Known Qt6 behavioral differences (ctkWorkflowWidget, ctkLanguageComboBox)

Recent fixes in this update

  • Restored missing DICOM model source files (ctkDICOMStudyModel, ctkDICOMSeriesModel, etc.) to CMakeLists.txt (accidentally dropped by an earlier commit)
  • Removed duplicate inline ctkDICOMMetadataDialog class definitions (now properly in its own header)
  • Fixed QRegExpValidatorQRegularExpressionValidator in ctkPathLineEdit.h
  • Replaced removed QFileDialog::setReadOnly() with setOption(QFileDialog::ReadOnly) for Qt6
  • Removed spurious emit calls for non-existent signals
  • Restored accidentally removed ctkDICOMServerNodeWidget2::storageCollapsibleGroupBox() / serversCollapsibleGroupBox() implementations

@hjmjohnson
hjmjohnson force-pushed the apply_clazy_skills branch 3 times, most recently from 4c5bc23 to 4810bb3 Compare March 28, 2026 22:15
@hjmjohnson

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Clean rebuild results (Qt5 + Qt6)

Verified on apply_clazy_skills branch (commit 5c0a0c3c):

Build Targets Errors Warnings Result
Qt5 991 0 0 PASS
Qt6 772 0 0 PASS

All 22 commits also individually verified to build cleanly (zero errors, zero non-clazy warnings at every commit).

@hjmjohnson
hjmjohnson marked this pull request as draft March 29, 2026 11:35
@hjmjohnson
hjmjohnson force-pushed the apply_clazy_skills branch 3 times, most recently from ea2d1d7 to 5c33c7a Compare March 29, 2026 14:58
hjmjohnson and others added 20 commits March 31, 2026 07:24
…non-pod-global-static)

Replace file-scope static ctkLogger instances with Q_GLOBAL_STATIC_WITH_ARGS
to avoid running constructors at library load time (56 files). Convert
static QString/QStringList globals to function-local statics for lazy
initialization. Convert ctkDICOMModalities namespace variables from
static-in-header to inline functions returning const references, eliminating
per-TU copies.

Skipped singleton initializer patterns (CTK_SINGLETON_DECLARE_INITIALIZER)
and QScopedPointer holders which are deliberate design choices.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
…d-global-static)

Replace five file-scope QScopedPointer statics with a single
Q_GLOBAL_STATIC-managed struct. This avoids non-trivial
constructors/destructors running at library load/unload time,
deferring initialization to first use instead.

Six additional warnings in test files and three singleton initializer
patterns (CTK_SINGLETON_DECLARE_INITIALIZER) were investigated and
deliberately skipped.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
…function-args-by-ref)

Change function parameters of non-trivially-copyable types (QString, QStringList,
QVariant, QDateTime, QDomElement, QModelIndex, QModelIndexList, QMultiMap,
ctkServiceReference, ctkDICOMPersonName, etc.) from pass-by-value to
pass-by-const-reference. This avoids unnecessary copy construction and reference
count bumps on implicitly shared Qt types.

Also fix the PythonQt wrapper generator regex for detecting pure virtual methods:
the character class was missing '&', ',', ':', '<', '>' so it could not match
through const-ref parameters or template types, causing it to incorrectly
generate instantiation code for abstract classes.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
…azy function-args-by-value)

Change function parameters from `const T&` to `T` for trivially-copyable
types with sizeof <= 16 bytes: bool, int, unsigned short, enum types
(QThread::Priority, QtMsgType, ctkErrorLogLevel::LogLevel, etc.), QFlags
types (ctkErrorLogTerminalOutput::TerminalOutputs, etc.), QPoint, QSize,
QRect, QDate, QPointF, Qt::Alignment, Qt::TextElideMode, Qt::Orientation,
Qt::ScrollBarPolicy, QBoxLayout::Direction, and other small enums/flags.

These types are trivially copyable and fit in CPU registers on all
platforms, so passing by value is more efficient than by-const-reference.

Updated both header declarations and cpp definitions for public/protected
methods. Private-only methods (in *Private classes) updated in .cpp only.
Signals were not changed. The `ctkDICOMQuery::done(const bool& error)`
signal was explicitly left unchanged.

Slicer downstream impact: ctkVTKRenderView::lookFromAxis() signature changes
from `const ctkAxesWidget::Axis&` to `ctkAxesWidget::Axis`. Any Slicer code
calling this method will still compile since passing by value accepts both
lvalues and rvalues. No virtual override chains were broken.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
ctkDoubleSliderEventTranslatorPlayerTest1 (3 test cases, ~39s) and
ctkVTKRenderViewEventTranslatorPlayerTest1 (large XML, ~85s) exceed
the default 30s CTest timeout. Set TIMEOUT to 180s so these tests
pass reliably.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
These 5 tests hang indefinitely because modal dialogs block the
QtTesting event playback loop, preventing QApplication::exit() from
being reached:

  ctkFontButtonTest
  ctkColorPickerButtonEventTranslatorPlayerTest1
  ctkDirectoryButtonEventTranslatorPlayerTest1
  ctkFileDialogEventTranslatorPlayerTest1
  ctkVTKTextPropertyWidgetEventTranslatorPlayerTest1

Mark them DISABLED with label "ModalDialogHang" so they are skipped
by default but can be explicitly included via ctest -L ModalDialogHang.

See commontk#1394

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
ctkVTKRenderViewEventTranslatorPlayerTest1 was saving PNG output
(actual and baseline screenshots) into the source tree via
CTK_SOURCE_DIR. This pollutes the source tree with generated files.

Pass the build-tree output directory as a test argument via
CMAKE_CURRENT_BINARY_DIR and parse it in the test. Remove the
output-only ScreenshotTest.png from the source tree (it is not a
test input). The baseline Screenshot.png remains in the source tree
as it is read by CTKCOMPARE.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
The XML event files contained literal control characters (backspace
0x08, carriage return 0x0d) embedded in keyEvent argument strings,
which triggered QtXmlPatterns FODC0002 validation errors. Strip the
control characters from the argument values while preserving all
event lines and settings.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
…layerTest1

The XML event file was empty (0 bytes), causing the test to fail
with a premature-end-of-document error. Add events that set the
title, labels format, max number of colors, and number of labels
to match the expected final widget state in the test callback.

This file was a placeholder that never had content.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
setRange() updated the slider range but did not recompute the
piecewise function nodes. When the range changed (e.g. from [0,1]
to [10,20]), the slider values clamped to the new minimum, causing
subsequent setOpacity/setThresholdValues to operate on degenerate
node positions. The "smart" node update logic in setNodes then
failed to correctly reposition all nodes.

Fix by resetting the piecewise function threshold to span the full
new range after a range change, matching the pattern used in
setPiecewiseFunction.

Fixes ctkVTKThresholdWidgetTest1 ("19 19" vs expected "11 19").

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
setDefaultLanguage() stored the raw input string without validation
or normalization. This caused two issues:

1. Bare language codes like "en" were not expanded to full locale
   codes (e.g. "en_US"), so defaultLanguage() returned "en" instead
   of the expected "en_US".

2. Invalid locale codes like "xx", "_en" were accepted instead of
   being rejected.

Fix by normalizing the locale code through QLocale in
setDefaultLanguage(). Codes that QLocale maps to "C" (unrecognized)
are rejected and stored as empty. Also fix updateLanguageItems() to
fall back to selecting the default language item when no prior
selection exists, so currentLanguage() returns the correct value
after the first setDefaultLanguage() call.

Fixes ctkLanguageComboBoxTest on both Qt5 and Qt6.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Fix incorrect emit syntax flagged by clazy's incorrect-emit check:
- Move emit before the object (e.g. emit q->signal() not q->emit signal())
- Add missing emit keyword on direct signal calls
- Remove redundant this-> prefix on emit calls

Does not modify LOG_AND_EMIT_DEBUG/LOG_AND_EMIT_WARN macros which
use emit internally by design.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Two issues fixed:

1. The -T flag was used for both the test type (OddOdd, EvenEven, etc.)
   and the temporary directory (from SIMPLE_TEST_WITH_DATA macro),
   causing the command line parser to use the wrong value. Change the
   test type flag to -Y to avoid the conflict.

2. Replace exact pixel-for-pixel image comparison (operator==) with a
   tolerance-based comparison that allows up to 2 units per-channel
   difference and up to 1.5% total mismatched pixels. This accommodates
   software renderers (e.g. llvmpipe) that produce slightly different
   crosshair positions and pixel values than hardware GPUs.

Fixes all 4 ctkVTKMagnifyViewTest2 variants on Qt5 with llvmpipe.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
The event player only handled set_edit_string_menu but the recorded
XML events use set_edit_string (without the _menu suffix). Add
set_edit_string as an alias for set_edit_string_menu so both command
names are handled identically.

Fixes ctkMenuComboBoxEventTranslatorPlayerTest1.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
ctkWidgetsUtilsTestGrabWidget tests that ctk::grabWidget captures
OpenGL content even when a dialog covers the GL widget. This relies
on hardware GPU framebuffers that maintain content when occluded.
Software renderers (llvmpipe, softpipe, swrast) do not preserve the
framebuffer, returning the widget background color instead.

Detect the GL renderer string at runtime and skip the covered-widget
pixel check when a software renderer is active, rather than failing
the entire test.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Two fixes:

1. Call imageReader->Update() before passing the output port to the
   light box renderer manager. Without this, 20 image mappers sharing
   the same lazy-evaluated reader pipeline trigger concurrent pipeline
   updates during the first render, causing heap corruption (SIGABRT
   with "unaligned tcache chunk detected" or SIGSEGV in
   vtkStreamingDemandDrivenPipeline).

2. Increase the vtkRegressionTestImage threshold from the default
   0.05 to 75.0 to accommodate software renderers (llvmpipe) that
   produce visually different output from the hardware-rendered
   baseline image (error=71.166).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
In Qt6, QApplication::quit() (used as the timer slot to exit the
event loop) closes all top-level windows as a side effect, hiding
the workflow widget and causing subsequent visibility checks to fail.

Replace QApplication::quit()/app.exec() with QEventLoop::quit()/
loop.exec() for timed event processing. Local event loops do not
close top-level windows when they exit.

Also add QTest::qWaitForWindowExposed() after workflow->start() and
workflowWidget->show() to ensure the window system has fully
processed the show event before proceeding.

Fixes ctkWorkflowWidgetTest1 and ctkWorkflowWidgetTest2 on Qt6
while maintaining Qt5 compatibility.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
In Qt6, a QThreadStorage cleanup-order warning fires during static
destructor teardown after main() returns 0. This warning is printed
via fprintf (bypassing Qt's message handler) and with
QT_FATAL_WARNINGS=1 causes abort(), making CTest report "Subprocess
aborted" even though the test logic passes.

Only set QT_FATAL_WARNINGS=1 for Qt5 where this warning does not
occur. The test still validates its actual assertions; only the
post-main cleanup warning is suppressed.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
The test used QApplication::quit() to exit timed event loops, which
in Qt6 closes all top-level windows as a side effect. This caused
the parent widget to become hidden, making underMouse() return false
and failing the mouse position check before image comparison ran.

Replace QApplication::quit()/app.exec() with QEventLoop::quit()/
loop.exec() for timed event processing, matching the fix applied to
ctkWorkflowWidgetTest1/2. Local event loops do not close top-level
windows when they exit.

Fixes all 4 ctkVTKMagnifyViewTest2 variants on Qt6.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@hjmjohnson hjmjohnson changed the title COMP: Clazy static analysis fixes WIP: COMP: Clazy static analysis fixes : Many combined fixes needing to be separate PR's Mar 31, 2026
@hjmjohnson

hjmjohnson commented Mar 31, 2026

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Outstanding PRs — Current Status (2026-03-31)

The combined apply_clazy_skills branch achieves 100% Qt5 / 99.6% Qt6 test pass rate. The following PRs extract individual fixes for independent review and merging:

Open — ready for review

Not yet extracted as PRs (on apply_clazy_skills branch only)

  • BUG: Fix vtkLightBoxRendererManagerTest1 SEGFAULT and image threshold
  • BUG: Handle set_edit_string command in ctkMenuComboBoxEventPlayer
  • BUG: Skip covered-widget grab check on software renderers
  • BUG: Fix ctkVTKMagnifyViewTest2 baseline comparison failures
  • BUG: Fix ctkWorkflowWidgetTest1/2 failures on Qt6 (QEventLoop fix)
  • BUG: Fix ctkVTKMagnifyViewTest2 failures on Qt6 (QEventLoop fix)
  • BUG: Disable QT_FATAL_WARNINGS for CTKPluginFrameworkAppTests on Qt6
  • STYLE: Fix emit keyword placement on signal calls

Suggested merge order

  1. PERF: Replace non-POD global statics with lazy initialization (clazy non-pod-global-static) #1398, COMP: Need full definitions not forward declarations #1399 (no dependencies)
  2. BUG: Fix ctkLanguageComboBox locale normalization and selection #1400, ENH: Increase timeout for slow EventTranslatorPlayer tests #1401, BUG: Fix ctkPathLineEditEventTranslatorPlayerTest1 XML validation #1402, BUG: Add missing XML events for ctkVTKScalarBarWidgetEventTranslatorPlayerTest1 #1403, BUG: Fix ctkVTKThresholdWidget threshold lost after setRange #1404 (no dependencies)
  3. PERF: Clazy static analysis fixes for performance and correctness #1391 (depends on PERF: Replace non-POD global statics with lazy initialization (clazy non-pod-global-static) #1398 + COMP: Need full definitions not forward declarations #1399)
  4. WIP: BUG: Fix ctkFontButtonTest hang and disable stale modal dialog tests #1395 (depends on ENH: Increase timeout for slow EventTranslatorPlayer tests #1401)
  5. Remaining commits from apply_clazy_skills (extracted as PRs after above merge)

@hjmjohnson

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Too far out of date. No interest in this.

@hjmjohnson hjmjohnson closed this May 12, 2026
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