Skip to content

Gene to pheno disease association fixes#1686

Open
sierra-moxon wants to merge 4 commits intomasterfrom
gene_to_pheno_disease_association_fixes
Open

Gene to pheno disease association fixes#1686
sierra-moxon wants to merge 4 commits intomasterfrom
gene_to_pheno_disease_association_fixes

Conversation

@sierra-moxon
Copy link
Copy Markdown
Member

@sierra-moxon sierra-moxon commented Jan 24, 2026

while working on: #1680
I noticed a bloating hierarchy of mixins that didn't do a lot to reduce redundancy, per say, but did do a lot to obfuscate (in my opinion) the requirements to make an instance of the classes they informed on. So I am proposing removing that extra hierarchy, adding slots and constraints they grouped onto the classes they informed directly. Its a big set of diffs, but I think overall the model is easier to understand with this PR.

…ne to disease or phenotypic feature association. add a work-around enumeration of predicates to use between gene and phenotype nodes as a work around for has_phenotype legacy plus associated_with vs. causes hierarchy challenges.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant