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Projects directory

In this directory, my public projects under development are organized into different folders according to their nature.

* behavioral_analysis

This directory contains code used for behavioral analysis, including code (in R) for:

• calculation of behavioral indexes and conversion of hexadecimal codes for file blinding in manual analysis;

  

• code for creating graphical ethograms;

  

• code for multivariate analysis.

  

* salmon

Bash scripts for FASTQ data extraction and sample processing with Salmon.

* bulk_rna_seq

R scripts for bulk RNA-Seq data analysis.

* single_cell_rna_seq

Python scripts for single-cell data analysis.

* microbiome

R scripts for microbiome data analysis.

* text_analysis

Codes for analysis of text data with R and Python, including:

• Bibliometric analysis

• Natural language processing and text annotation

  

• Extracting biomedical texts from NCBI with E-Utility

* miscellaneous

Miscellaneous codes with different purposes.

* sequence_analysis

Preliminary codes for analysis of DNA/RNA sequences.

* database

Codes in SQL and DBML for database projects.

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