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Visualize effective connectivity in circular layout with AAL atlas

Author: Trang Le

This code is to visualize effective connectivity in circular layout with AAL atlas.

Link to interactive version, have to download to see html file

  • Regions belong to same lobe have same color (currenlty using Turbo256 color palette).

  • Edges has multiple color to indicate direction of the connection between 2 nodes, where blue color indicates the 'from' node, and red color indicates the 'to' node.

Environment

  • python=3.10.8
  • bokeh=3.0.2
  • networkx=2.8.8
  • pandas

Require input

  1. Excel file of data for connectivity, named 'Conn_for_graph.xlsx', as formatted file in sample folder
  2. Excel file of layout for atlas, 'groupSIFT_atlas.xlsx'

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