Update mk_sam_file.py so it doesn't produce extra lines when run in Windows - #13

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YuanyueYaoM wants to merge 4 commits into

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YuanyueYaoM:Fix_newlines_windows

Commits on Mar 2, 2026

Update mk_sam_file.py so it doesn't produce extra lines when ran in Windows
YuanyueYaoM
committed
e4246b6

Commits on Mar 5, 2026

Fix pandas 3.x Copy-on-Write chained assignment error by replacing df[sample][col] = ... with single-step .loc assignments to ensure updates modify the original DataFrame.
Swanson-Hysell
committed
062d1ca
fix the malformed csv bug
Swanson-Hysell
committed
a0a5cb8
Update mk_sam_file.py to use CRLF as line break
YuanyueYaoM
committed
a3efb91