[devops] update version on develop branch to 0.18.0

.github/workflows/d2e-demosetup-release.yml

@@ -6,13 +6,13 @@ on:
   workflow_dispatch:
     inputs:
       version:
-        default: "0.17.0-beta"
+        default: "0.18.0-beta"
         description: Enter version to use
         required: true
         type: string
 
 env:
-  DEFAULT_VERSION: "0.17.0-beta"
+  DEFAULT_VERSION: "0.18.0-beta"
 
 jobs:
   demosetup:

docs/website/docs/2-admin_guide/5-setup/0-system-setup/cli.md

@@ -94,7 +94,7 @@ Download the updated binary for your operating system and architecture using the
 In the d2e directory, open the `.env` file and make these changes:
 - Set `DOCKER_TAG_NAME` to the docker image tag for the new version.
   - Example: For version `0.12.0`, set `DOCKER_TAG_NAME=0.12.0-beta`. The format is `DOCKER_TAG_NAME=<version>-beta`.
-- Add `PLUGINS_SEED_UPDATE=true` to trigger a plugin upgrade on the next startup.
+- Additional step for upgrades from versions earlier than v0.18: add `PLUGINS_SEED_UPDATE=true` to trigger a plugin upgrade on the next startup.
 
 - Verify the new version is active:
 

package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohdsi/d2e",
-  "version": "0.17.0",
+  "version": "0.18.0",
   "description": "Data2Evidence Installer",
   "license": "Apache-2.0",
   "homepage": "https://d2e.sg",

scripts/cli.ts

@@ -40,8 +40,8 @@ interface CliOptions {
 
 class D2ECli {
   version: string;
-  LATEST_DOCKER_TAG_NAME: string = "0.17.0-beta"; // Update this as needed
-  default_version: string = "0.17.0"; // Update this as needed default/base version
+  LATEST_DOCKER_TAG_NAME: string = "0.18.1-beta"; // Update this as needed
+  default_version: string = "0.18.0"; // Update this as needed default/base version
   CADDY__CONFIG: string;
   ENV_TYPE: string;
   DOCKER_LOG_LEVEL: string;
@@ -92,17 +92,8 @@ class D2ECli {
       "services",
       "atlas-db-init"
     );
-    try {
-      fs.mkdirSync(atlasDbInitDir, { recursive: true });
-    } catch (err: any) {
-      if (err?.code === "EACCES" || err?.code === "EPERM") {
-        console.warn(
-          `Warning: could not create ${atlasDbInitDir} (permission denied). ` +
-            `Skipping atlas-db-init staging; continuing with existing files.`
-        );
-        return;
-      }
-      throw err;
+    if (!this.replace_staged_dir(atlasDbInitDir)) {
+      return;
     }
     for (const [name, content] of Object.entries(atlasDbInitScripts)) {
       this.write_embedded_file(path.join(atlasDbInitDir, name), content);
@@ -136,6 +127,35 @@ class D2ECli {
       this.write_embedded_file(dest, content);
     }
   }
+
+  // Clear the staged directory before rewriting it, so its contents always
+  // match the embedded set exactly. webapi-init globs whatever it finds
+  // (`for f in /scripts/*.sql`) instead of reading a manifest, so a script a
+  // previous CLI version staged and no longer ships would still be executed --
+  // and under ON_ERROR_STOP=1 one that no longer applies fails the whole init.
+  // Removing first makes stale scripts impossible rather than something to
+  // detect after the fact.
+  //
+  // Only the directory this CLI authors is removed. compose_dir is the repo
+  // root when the CLI runs from a checkout, so the `services/` above this holds
+  // the real service sources and must never be touched.
+  private replace_staged_dir(dir: string): boolean {
+    try {
+      fs.rmSync(dir, { recursive: true, force: true });
+      fs.mkdirSync(dir, { recursive: true });
+      return true;
+    } catch (err: any) {
+      if (err?.code === "EACCES" || err?.code === "EPERM") {
+        console.warn(
+          `Warning: could not replace ${dir} (permission denied). ` +
+            `It looks owned by another user (e.g. root from a release download). ` +
+            `Continuing with the existing files.`
+        );
+        return false;
+      }
+      throw err;
+    }
+  }
   private write_embedded_file(dest: string, content: string): void {
     try {
       if (fs.existsSync(dest) && fs.readFileSync(dest, "utf8") === content) {