Q3 Features and Fixes#26

Merged

Wei (Celia) Xu (celiafish) merged 177 commits into

psavery:nsls2-q3

May 28, 2026

Commits on Apr 17, 2026

Commits on Apr 20, 2026

Merge pull request #1 from psavery/new-pipeline-fixes
Alessandro Genova (alesgenova)
authored

Commits on Apr 21, 2026

implement loading state files created by the old tomviz
Alessandro Genova (alesgenova)
committed
implement loading and saving state files created by the new tomviz
Alessandro Genova (alesgenova)
committed

Commits on Apr 22, 2026

fix a series of memory leaks, some of which were major
Alessandro Genova (alesgenova)
committed

Commits on Apr 29, 2026

Commits on May 4, 2026

Update ITK API

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Reorganize operators and add OperatorSearchDialog

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Put logic to get main window instance in function

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Add interactive cylindrical crop widget

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Check for nullptr when reading CONDA_PREFIX

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Use modern cmake import targets for TBB

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Don't use a hardcoded "Monospace" font

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Prevent ParaView plugin widgets from appearing

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Fix macosx bundle path for conda packages

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Fix import paths for build trees on Mac

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Write human-readable stack trace on Windows crash

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Remove Monospace from PythonTransformEditorWidget

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
implement per-node external python environment execution
Alessandro Genova (alesgenova)
committed
implement a series of minor usability updates
Alessandro Genova (alesgenova)
committed

Commits on May 5, 2026

Fix compile-time warnings

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Increase vertical size of data properties tables

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Add drag-n-drop support

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Add hyperspy format as an HDF5 format

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Always auto-execute tvh5 pipelines

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Bring back scan IDs in pyxrf and ptycho workflows

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Set tomviz_pipeline_env for custom operators

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Fix Python console crash

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Initialize python synchronously

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
add definition and infrascructure for a new version of python transforms and sources
Alessandro Genova (alesgenova)
committed

Commits on May 6, 2026

Commits on May 11, 2026

Fix save data reaction

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Update Ptycho workflow to use SourceNode

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Refactor PyXRF workflow to be a source node

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Fix default camera orbit animation

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Fix animation helper to use new pipeline elements

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Disable changing opacity with B&C editor

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Disable panning the histogram opacity widget

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Fix "Monospace" font warning on macos

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Fix Python editor jumping around

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Fix returns on empty lines in Python editor

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
improve the custom transforms menu
Alessandro Genova (alesgenova)
committed

Commits on May 14, 2026

Commits on May 15, 2026

Fix ClipSink to avoid render in worker thread

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Add instructions for cylindrical crop

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Add SIRT, ART, and TV to tomopy methods

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Change "Modules" to "Visualizations"

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Add ability to use GPU for tomopy SIRT and MLEM

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Update animation helper module animations

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Change Module->Visualization in animation helper

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Allow PyXRF workflow to load CSV also

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Allow download skipping in PyXRF workflow

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
add a LabelMap port type
Alessandro Genova (alesgenova)
committed
Allow setting versions for multiple rows

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Add .npy and .mat to list of common file types

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Add simple mrc writer

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Add simple DICOM writer/reader

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Populate volume scalars options after data available

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Add tests for new recent features

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Fix existing test failures

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Fix displayed version in dev environment

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed
Disable multi-volume for now

Patrick Avery (psavery)
authored and
Alessandro Genova (alesgenova)
committed

Commits on May 19, 2026

Commits on May 20, 2026

Commits on May 21, 2026

Commits on May 25, 2026

Trigger CI for PRs against branch 3.0
Patrick Avery (psavery)
committed