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Let's get HomoplasyFinder working smoothly on your computer! See pages on right 👉
Crispell, J., Balaz, D., & Gordon, S. V. (2019). HomoplasyFinder: a simple tool to identify homoplasies on a phylogeny. Microbial Genomics. https://doi.org/10.1099/mgen.0.000245
Java source code is available here and R package (wrapper) code here.