Skip to content

Navigation Menu

Appearance settings

- AI CODE CREATION
  GitHub CopilotWrite better code with AI
  GitHub Copilot appDirect agents from issue to merge
  MCP Registry^NewIntegrate external tools
- DEVELOPER WORKFLOWS
  ActionsAutomate any workflow
  CodespacesInstant dev environments
  IssuesPlan and track work
  Code ReviewManage code changes
- APPLICATION SECURITY
  GitHub Advanced SecurityFind and fix vulnerabilities
  Code securitySecure your code as you build
  Secret protectionStop leaks before they start
- EXPLORE
  Why GitHub
  Documentation
  Blog
  Changelog
  Marketplace
View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

Uh oh!

There was an error while loading. Please reload this page.

GenomicMedLab / AnyVLM Public

Notifications You must be signed in to change notification settings
Fork 0
Star 3

Code
Issues 5
Pull requests 1
Discussions
Actions
Projects
Security and quality
Insights

Additional navigation options

Code
Issues
Pull requests
Discussions
Actions
Projects
Security and quality
Insights

Implement liftover requests#105

Merged

jennifer-bowser merged 21 commits into

mainGenomicMedLab/AnyVLM:mainfrom

issue-104-implement-liftover-requestsGenomicMedLab/AnyVLM:issue-104-implement-liftover-requestsCopy head branch name to clipboard

Jun 26, 2026

Conversation Commits21 (21)Checks Files changed

Merged

Implement liftover requests#105
jennifer-bowser merged 21 commits into
mainfrom
issue-104-implement-liftover-requests

Commits

Commits on May 28, 2026

first pass at implementing liftover requests
jennifer-bowser
committed
update 'retrieve_allele_by_expression' in HTTP client to prevent 'response' possibly being unbound
jennifer-bowser
committed
add definition of 'retreive_allele_by_id' for Python client
jennifer-bowser
committed
fix HTTP implementation of 'get_liftover_variation_id' and add Python client implementation
jennifer-bowser
committed
fix tests
jennifer-bowser
committed

Commits on Jun 3, 2026

clean up 'get_caf' to handle edge cases where variant/variant id are 'None'
jennifer-bowser
committed
fix some failing tests
jennifer-bowser
committed

Commits on Jun 17, 2026

update import to align w/ latest AnyVar variable naming
jennifer-bowser
committed
update python client's 'get_liftover_variation_id' to use correct syntax for mapping endpoint
jennifer-bowser
committed
fix failing test
jennifer-bowser
committed
fix failing test: 'test_variant_counts_endpoint_anyvar_unavailable'
jennifer-bowser
committed
fix failing test
jennifer-bowser
committed
rename tests + fixtures to reflect new function name
jennifer-bowser
committed
fix cassette
jennifer-bowser
committed
bring back accidentally nuked cassette + rename it
jennifer-bowser
committed

Commits on Jun 24, 2026

revert change to 'Nucleotide' that would've allowed multiple Nucleotides instead of restraining it to one
jennifer-bowser
committed
use enum instead of text matching
jennifer-bowser
committed
rename 'get_caf_*' to 'get_cafs' + fix '_validate_allele' logic
jennifer-bowser
committed
remove id check in '_retrieve_cafs_with_resolved_alleles', since '_validate_allele' already does that
jennifer-bowser
committed
fix 'http client's 'get_liftover_variation_id'
jennifer-bowser
committed
rename cassettes folder from '*get_caf' to '*get_cafs'
jennifer-bowser
committed

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.