Skip to content
View GabrielCabas's full-sized avatar
18 followers · 23 following

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Block or report GabrielCabas

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
GabrielCabas/README.md

Hi there 👋

I'm Gabriel, a Bioinformatics Engineer working at the intersection of genomics, machine learning, and software development.

I enjoy building tools, exploring biological data, and solving problems that are usually more complicated than they initially appear.

Current interests:

🧬 Statistical Genetics & GWAS

🌎 Local Ancestry Inference

🧪 DNA Methylation & Epigenomics

🧠 Machine Learning

🔬 Computational Histopathology

Let's connect

I'm always interested in collaborations involving genomics, AI, bioinformatics, open-source software, and difficult biological questions.

Success is just failure with enough epochs.

Pinned Loading

  1. digenoma-lab/LEMUR digenoma-lab/LEMUR Public

    Local ancestry & Epigenetic Methylation for differential Regions

    C++

  2. digenoma-lab/MANTIS digenoma-lab/MANTIS Public

    Multimodal Alignment of Normalized Tissue Sections

    Python

  3. digenoma-lab/HistoMILTrainer digenoma-lab/HistoMILTrainer Public

    Python library to train Multi Instance Learning algorithms in histology for custom tasks.

    Jupyter Notebook 2 2

  4. digenoma-lab/HistologyFeatureExtraction digenoma-lab/HistologyFeatureExtraction Public

    Nextflow pipeline to extract features in histology WSIs.

    Nextflow 1

  5. digenoma-lab/HistologyMultiInstanceLearning digenoma-lab/HistologyMultiInstanceLearning Public

    Nextflow pipeline to evaluate MIL architectures in concordance with histology foundational models.

    Nextflow

  6. digenoma-lab/HistologyLinearProbing digenoma-lab/HistologyLinearProbing Public

    Executes a linear probing to evaluate some foundational models in histopathology cases.

    Python 1