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added sigfig option for output - #854

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jamie-m-a wants to merge 1 commit into
Ensembl:postreleasefix/116from
jamie-m-a:feature/pLI_update
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added sigfig option for output#854
jamie-m-a wants to merge 1 commit into
Ensembl:postreleasefix/116from
jamie-m-a:feature/pLI_update

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@jamie-m-a

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Added param option sigfig for the plugin - the newer gnomAD 4.1 data has scores with very low values, the existing number formatting reduces many to 0.00.

Can use input file /nfs/production/flicek/ensembl/variation/enseweb-data_tools/beta_plugins/grch38/pli_transcript.txt for the plugin (transcript extract from the newer gnomAD data).

Run with --plugin pLI,/nfs/production/flicek/ensembl/variation/enseweb-data_tools/beta_plugins/grch38/pli_transcript.txt,transcript,sigfig

Example variant:
1 1243545 . G A

@likhitha-surapaneni
likhitha-surapaneni self-requested a review August 12, 2026 10:19

@likhitha-surapaneni likhitha-surapaneni left a comment

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LGTM, thanks @jamie-m-a

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