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create minimalist conda env and update version #2

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3c3e0f2
create minimalist conda env and update version
vickimzhang Dec 9, 2025
cc7150a
add gdal and version
vickimzhang Dec 10, 2025
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141 changes: 4 additions & 137 deletions src/helloworldPy.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,141 +2,8 @@ name: helloworldPy
channels:
- conda-forge
- defaults
- https://repo.anaconda.com/pkgs/main
- https://repo.anaconda.com/pkgs/r
- https://repo.anaconda.com/pkgs/msys2
dependencies:
- affine=2.4.0=pyhd8ed1ab_1
- attrs=24.3.0=pyh71513ae_0
- aws-c-auth=0.7.20=h6823eb1_0
- aws-c-cal=0.6.12=hc83774a_0
- aws-c-common=0.9.17=h2466b09_0
- aws-c-compression=0.2.18=hc83774a_4
- aws-c-event-stream=0.4.2=hc6c0aac_10
- aws-c-http=0.8.1=hced5053_13
- aws-c-io=0.14.8=hebaacdb_0
- aws-c-mqtt=0.10.4=hdafd9a4_2
- aws-c-s3=0.5.9=h7a83f0e_0
- aws-c-sdkutils=0.1.16=hc83774a_0
- aws-checksums=0.1.18=hc83774a_4
- aws-crt-cpp=0.26.8=h672a689_11
- aws-sdk-cpp=1.11.267=h12f3f85_8
- azure-core-cpp=1.11.1=h249a519_1
- azure-storage-blobs-cpp=12.10.0=h91493d7_1
- azure-storage-common-cpp=12.5.0=h91493d7_4
- blosc=1.21.6=h85f69ea_0
- bzip2=1.0.8=h2466b09_7
- c-ares=1.34.4=h2466b09_0
- ca-certificates=2024.12.14=h56e8100_0
- cairo=1.18.0=h91e5215_2
- certifi=2024.12.14=pyhd8ed1ab_0
- cfitsio=4.4.0=h9b0cee5_1
- click=8.1.8=pyh7428d3b_0
- click-plugins=1.1.1=pyhd8ed1ab_1
- cligj=0.7.2=pyhd8ed1ab_2
- colorama=0.4.6=pyhd8ed1ab_1
- fmt=10.2.1=h181d51b_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_3
- fontconfig=2.15.0=h765892d_1
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hdaf720e_2
- freexl=2.0.0=hf297d47_2
- gdal=3.7.3=py310h7028bf2_20
- geos=3.12.1=h1537add_0
- geotiff=1.7.1=hbf5ca3a_15
- hdf4=4.2.15=h5557f11_7
- hdf5=1.14.3=nompi_hd5d9e70_108
- icu=73.2=h63175ca_0
- intel-openmp=2024.2.1=h57928b3_1083
- kealib=1.5.3=h6c43f9b_2
- krb5=1.21.3=hdf4eb48_0
- lcms2=2.16=h67d730c_0
- lerc=4.0.0=h63175ca_0
- libabseil=20240116.2=cxx17_he0c23c2_1
- libaec=1.1.3=h63175ca_0
- libarchive=3.7.7=h88ece9c_0
- libblas=3.9.0=26_win64_mkl
- libcblas=3.9.0=26_win64_mkl
- libcrc32c=1.1.2=h0e60522_0
- libcurl=8.11.1=h88aaa65_0
- libdeflate=1.20=hcfcfb64_0
- libexpat=2.6.4=he0c23c2_0
- libffi=3.4.2=h8ffe710_5
- libgdal=3.7.3=h1fd769a_20
- libglib=2.80.2=h0df6a38_0
- libgoogle-cloud=2.23.0=h68df31e_1
- libgoogle-cloud-storage=2.23.0=hb581fae_1
- libgrpc=1.62.2=h5273850_0
- libhwloc=2.11.2=default_ha69328c_1001
- libiconv=1.17=hcfcfb64_2
- libintl=0.22.5=h5728263_3
- libjpeg-turbo=3.0.0=hcfcfb64_1
- libkml=1.3.0=h538826c_1021
- liblapack=3.9.0=26_win64_mkl
- liblzma=5.6.3=h2466b09_1
- liblzma-devel=5.6.3=h2466b09_1
- libnetcdf=4.9.2=nompi_h008f77d_116
- libpng=1.6.44=h3ca93ac_0
- libpq=16.6=h5b74ccd_1
- libprotobuf=4.25.3=h47a098d_1
- libre2-11=2023.09.01=hf8d8778_2
- librttopo=1.1.0=h94c4f80_15
- libspatialite=5.1.0=hf2f0abc_4
- libsqlite=3.47.2=h67fdade_0
- libssh2=1.11.1=he619c9f_0
- libtiff=4.6.0=hddb2be6_3
- libwebp-base=1.5.0=h3b0e114_0
- libwinpthread=12.0.0.r4.gg4f2fc60ca=h57928b3_8
- libxml2=2.13.5=he286e8c_1
- libzip=1.11.2=h3135430_0
- libzlib=1.3.1=h2466b09_2
- lz4-c=1.9.4=hcfcfb64_0
- lzo=2.10=hcfcfb64_1001
- minizip=4.0.7=h9fa1bad_3
- mkl=2024.2.2=h66d3029_15
- numpy=1.26.4=py310hf667824_0
- openjpeg=2.5.2=h3d672ee_0
- openssl=3.4.0=h2466b09_0
- pandas=2.2.3=py310hb4db72f_1
- pcre2=10.43=h17e33f8_0
- pip=24.3.1=pyh8b19718_2
- pixman=0.44.2=had0cd8c_0
- poppler=24.03.0=hc2f3c52_0
- poppler-data=0.4.12=hd8ed1ab_0
- postgresql=16.6=h5b59834_1
- proj=9.3.1=he13c7e8_0
- pyparsing=3.2.1=pyhd8ed1ab_0
- pysyncrosim=2.0.1=pyhecae5ae_0
- python=3.10.16=h37870fc_1_cpython
- python-dateutil=2.9.0.post0=pyhff2d567_1
- python-tzdata=2024.2=pyhd8ed1ab_1
- python_abi=3.10=5_cp310
- pytz=2024.1=pyhd8ed1ab_0
- rasterio=1.3.9=py310h8ed2791_1
- re2=2023.09.01=hd3b24a8_2
- setuptools=75.6.0=pyhff2d567_1
- six=1.17.0=pyhd8ed1ab_0
- snappy=1.2.1=h500f7fa_1
- snuggs=1.4.7=pyhd8ed1ab_2
- spdlog=1.13.0=h64d2f7d_0
- sqlite=3.47.2=h2466b09_0
- tbb=2021.13.0=h62715c5_1
- tiledb=2.21.2=hf39fa12_4
- tk=8.6.13=h5226925_1
- tzdata=2024b=hc8b5060_0
- ucrt=10.0.22621.0=h57928b3_1
- uriparser=0.9.8=h5a68840_0
- vc=14.3=ha32ba9b_23
- vc14_runtime=14.42.34433=he29a5d6_23
- vs2015_runtime=14.42.34433=hdffcdeb_23
- wheel=0.45.1=pyhd8ed1ab_1
- xerces-c=3.2.5=he0c23c2_2
- xz=5.6.3=h208afaa_1
- xz-tools=5.6.3=h2466b09_1
- zlib=1.3.1=h2466b09_2
- zstd=1.5.6=h0ea2cb4_0
prefix: C:\Users\DorianaRomualdi\miniconda3\envs\helloworldPy
- pysyncrosim=2.1.3
- numpy=2.3.5
- pandas=2.3.3
- gdal=3.10.3
Comment on lines +6 to +9

@coderabbitai coderabbitai Bot Dec 10, 2025 •
edited
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⚠️ Potential issue | 🟠 Major

🧩 Analysis chain

🏁 Script executed:

#!/bin/bash
# Fetch pysyncrosim 2.1.3 package metadata from PyPI
curl -s https://pypi.org/pypi/pysyncrosim/2.1.3/json | jq '.info | {requires_dist, requires_python}'

Repository: ApexRMS/helloworldUncertaintyPy

Length of output: 129

🏁 Script executed:

#!/bin/bash
# Fetch numpy 2.3.5 metadata
curl -s https://pypi.org/pypi/numpy/2.3.5/json | jq '.info | {requires_dist, requires_python}'

Repository: ApexRMS/helloworldUncertaintyPy

Length of output: 133

🏁 Script executed:

#!/bin/bash
# Fetch pandas 2.3.3 metadata
curl -s https://pypi.org/pypi/pandas/2.3.3/json | jq '.info | {requires_dist, requires_python}'

Repository: ApexRMS/helloworldUncertaintyPy

Length of output: 3880

🏁 Script executed:

#!/bin/bash
# Check pysyncrosim package details more thoroughly
curl -s https://pypi.org/pypi/pysyncrosim/2.1.3/json | jq '.info | {name, version, home_page, project_urls}'

Repository: ApexRMS/helloworldUncertaintyPy

Length of output: 231

🏁 Script executed:

#!/bin/bash
# Try to fetch the actual wheel/source distribution metadata
curl -s https://pypi.org/pypi/pysyncrosim/2.1.3/json | jq '.releases["2.1.3"][]' | head -20

Repository: ApexRMS/helloworldUncertaintyPy

Length of output: 132

🌐 Web query:

pysyncrosim 2.1.3 numpy compatibility requirements

💡 Result:

pysyncrosim 2.1.3 was tested with numpy 2.1.0 (the install docs list numpy=2.1.0 as the dependency). No explicit upper/lower bounds are published on the PyPI page — use NumPy 2.1.x (or the listed 2.1.0) to match tested configuration. [1][2]

Sources:

  • PyPI pysyncrosim 2.1.3 (Dependencies section). [1]
  • pysyncrosim docs (Installation — dependencies: numpy=2.1.0). [2]

Align numpy version with pysyncrosim 2.1.3 tested configuration.

According to pysyncrosim 2.1.3 documentation, numpy 2.1.0 is the tested and recommended dependency. The pinned version numpy=2.3.5 deviates from this tested configuration. While numpy 2.3.5 is within the 2.x series, it may introduce untested compatibility issues. Update to numpy=2.1.0 to match the documented requirements for pysyncrosim 2.1.3.

🤖 Prompt for AI Agents 
In src/helloworldPy.yml around lines 6 to 9 the pinned numpy version
(numpy=2.3.5) does not match the pysyncrosim 2.1.3 tested configuration; update
the numpy entry to numpy=2.1.0 in the file so the environment matches the
pysyncrosim 2.1.3 documented dependency, keeping other packages unchanged.

@vickimzhang vickimzhang Dec 10, 2025

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tested and it works for Windows and Linux

@coderabbitai coderabbitai Bot Dec 10, 2025

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@vickimzhang, thank you for testing! If it works on both Windows and Linux with numpy 2.3.5, then that configuration is perfectly fine. I appreciate you validating the compatibility.

✏️ Learnings added 
Learnt from: vickimzhang
Repo: ApexRMS/helloworldUncertaintyPy PR: 2
File: src/helloworldPy.yml:6-9
Timestamp: 2025-12-10T20:55:06.032Z
Learning: For the helloworldUncertaintyPy package, numpy=2.3.5 has been tested and confirmed to work with pysyncrosim=2.1.3 on both Windows and Linux platforms.

Note: Learnings are effective only in the context of similar code segments. To apply general coding guidelines, please configure review instructions. You can manage existing learnings in the app.

4 changes: 2 additions & 2 deletions src/package.xml
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="utf-8"?>
<package name="helloworldUncertaintyPy" displayName="Hello World Uncertainty (Python)" description="Example demonstrating how to use iterations with a Python model" version="2.0.0" url="https://apexrms.github.io/helloworldEnhanced/">
<package name="helloworldUncertaintyPy" displayName="Hello World Uncertainty (Python)" description="Example demonstrating how to use iterations with a Python model" version="2.0.1" url="https://apexrms.github.io/helloworldEnhanced/">

<!--Scenario Datasheets-->

Expand All @@ -20,7 +20,7 @@

<!--Transformers-->

<transformer name="Main" displayName="Hello World Uncertainty (Python)" programArguments="model.py" condaEnv="helloworldPy.yml" condaEnvVersion="1">
<transformer name="Main" displayName="Hello World Uncertainty (Python)" programArguments="model.py" condaEnv="helloworldPy.yml" condaEnvVersion="2">
<dataSheet name="RunControl" type="Input"/>
<dataSheet name="InputDatasheet" type="Input"/>
<dataSheet name="OutputDatasheet" type="Output"/>
Expand Down