Skip to content

Updated notebooks #1361

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
tobyallwood wants to merge 5 commits into
base: main
Choose a base branch
from
Open

Updated notebooks #1361

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
8ff08fe
Finished updating 02 + 03 code
tobyallwood May 19, 2026
8aa85d6
Updated notebook 03
tobyallwood May 19, 2026
d0d9acc
Finished notebook 02
tobyallwood Jun 2, 2026
090d6d2
Finished notebook 01
tobyallwood Jun 4, 2026
3a5547c
Updated reference to notebook
tobyallwood Jun 4, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
11 changes: 5 additions & 6 deletions docs/usage/notebooks.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -5,12 +5,11 @@ in a more interactive manner, calling individual steps. This is useful as it all
and with rapid feedback the parameters that may need adjusting in order to process a batch of scans. The notebooks can
be found in the `notebook/` directory after cloning the GitHub repository.

| Notebook | Description |
| --------------------------------------- | ----------------------------------------------------------------------------------------------------------------------- |
| `00-Walkthrough-minicircle.ipynb` | Step-by-step walkthrough of processing `minicircle.spm` from the `tests/resources/` directory. |
| `01-Walthrhgouh-interactive.ipynb` | **Work in Progress** As above but uploading a single scan. Will be deployed in Google Colab/Binder for interactive use. |
| `02-Summary-statistics-and-plots.ipynb` | Plotting statistics interactively. |
| `03-Plotting-scans.ipynb` | Plotting NumPy arrays of scans from different stages of processing. |
| Notebook | Description |
| --------------------------------------- | ---------------------------------------------------------------------------------------------- |
| `01-Walkthrough-minicircle.ipynb` | Step-by-step walkthrough of processing `minicircle.spm` from the `tests/resources/` directory. |
| `02-Summary-statistics-and-plots.ipynb` | Plotting statistics interactively. |
| `03-Plotting-scans.ipynb` | Plotting NumPy arrays of scans from different stages of processing. |

## Installation

Expand Down
Loading
Loading