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Workflow runs

• Refactor pipeline to use absolute paths, update Snakefile to main wor…

  failed:
  CI#8:Commit7a9c610pushedbyACTN3
  main

  Nov 4, 202510s
  More actions for workflow run 8

• Update config file paths in Snakefile to reference parent directory

  failed:
  CI#7:Commit71b72d2pushedbyACTN3
  main

  Nov 4, 20256m 23s
  More actions for workflow run 7

• Refactor pipeline for improved config handling, update dataset config…

  failed:
  CI#6:Commita34089apushedbyACTN3
  main

  Nov 4, 20258m 7s
  More actions for workflow run 6

• add docstrings to rules, use {logs} variable for log paths, and updat…

  failed:
  CI#5:Commit6e7df35pushedbyACTN3
  main

  Nov 4, 20256m 43s
  More actions for workflow run 5

• wildcards error fix

  failed:
  CI#4:Commitbdbb282pushedbyACTN3
  main

  Nov 3, 20259m 50s
  More actions for workflow run 4

• additional root Snakefile; CI/CD fix

  failed:
  CI#3:Commitad33a2dpushedbyACTN3
  main

  Nov 3, 20256m 36s
  More actions for workflow run 3

• update datasets config, add troubleshooting guide, update README, and…

  failed:
  CI#2:Commit3ccd351pushedbyACTN3
  main

  Nov 2, 20256m 52s
  More actions for workflow run 2

• Add CI workflow, citation, contributing, and license files; major REA…

  failed:
  CI#1:Commit09a79ecpushedbyACTN3
  main

  Nov 2, 20257m 9s
  More actions for workflow run 1