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Add vagus terms for Feinstein datasets #294

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Merged
rchristie merged 3 commits into from
Jul 23, 2026
Merged

Add vagus terms for Feinstein datasets #294

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3456151
Add vagus terms for Feinstein datasets
mlin865 Jul 16, 2026
18015cf
Merge remote-tracking branch 'abi/main' into terms
mlin865 Jul 22, 2026
5822134
Add interlex preferred term as alternative
mlin865 Jul 23, 2026
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17 changes: 17 additions & 0 deletions src/scaffoldmaker/annotation/vagus_terms.py
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Expand Up @@ -161,7 +161,13 @@
("right branch between vagus nerve and cervical spinal nerves", "ILX:0795644"),
("right branch between vagus nerve and cervical sympathetic trunk", "ILX:0794775", "right branch to cervical sympathetic trunk"),
("right branch between cervical vagus nerve and a 'branch between cervical vagus nerve and cervical vagus nerve'", "ILX:0794821"),
("right branch between cervical vagus nerve and cervical vagus nerve", "ILX:0794810"),
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("right branch between cervical vagus and inferior root of ansa cervicalis", "ILX:0795597"),
("right branch between vagus nerve and \"branch between vagus nerve and cervical sympathetic trunk\"", "ILX:0794778"),
("right branch between vagus nerve and cervical sympathetic trunk and or superior cervical ganglion", "ILX:0794042"),
("right branch between vagus nerve and hypoglossal nerve", "ILX:0793909"),
("right branch between vagus nerve and superior cervical cardiac nerve", "ILX:0795775"),
("right branch between vagus nerve and superior laryngeal nerve", "ILX:0794133"),
("right branch of inferior root of ansa cervicalis", "ILX:0796313"),
("right branch of vagus nerve to ipsilateral carotid bifurcation", "ILX:0794089", "right branch to carotid bifurcation"),
("right branch of vagus nerve to ipsilateral carotid sinus", "ILX:0794108"),
Expand All @@ -173,11 +179,15 @@
("right cardiovascular branch group of cervical vagus nerve", "ILX:0795379"),
("right cardiovascular branch group of thoracic vagus nerve", "ILX:0795412"),
("right cervical cardiac branch of vagus nerve", "ILX:0794165", "right cervical cardiac branch"),
("right cranial nerve bundle to cervical spinal nerve", "ILX:0795547"),
("right medial pulmonary branch of the esophageal plexus", "ILX:0796554"),
("right pharyngeal branch of cranial nerve bundle", "ILX:0795526"),
("right pharyngeal branch of vagus nerve", "ILX:0793987"),
("right thoracic cardiac branch of vagus nerve", "ILX:0794202"),
("right unknown branch of vagus nerve", "ILX:0793923"),
("branch between right thoracic vagus trunk and tracheo-esophageal plexus", "ILX:0796658"),
("cardiovascular and cardiopulmonary branch of right thoracic vagus nerve", "ILX:0796455", "right cardiovascular and cardiopulmonary branch of right thoracic vagus nerve"),
("right branch between vagus nerve and C1 spinal nerve", "ILX:0793966"),

# posterior vagus, a continuation of right vagus
("posterior esophageal vagus trunk", "ILX:0794858"),
Expand Down Expand Up @@ -254,16 +264,23 @@
("left branch between vagus nerve and hypoglossal nerve", "ILX:0793914"),
("left branch between vagus nerve and spinal accessory nerve", "ILX:0793960"),
("left branch between vagus nerve and superior root of ansa cervicalis", "ILX:0793951"),
("left branch of cervical vagus nerve to sympathetic chain, cardiovascular, and pulmonary structures", "ILX:0796416"),
("left branch of thoracic vagus nerve to aorta", "ILX:0796495"),
("left branch of thoracic vagus nerve to esophagus", "ILX:0794310"),
("left branch of vagus nerve to ipsilateral carotid bifurcation", "ILX:0794094"),
("left branch of vagus nerve to ipsilateral carotid sinus", "ILX:0794113"),
("left branch of vagus nerve to ipsilateral common carotid artery", "ILX:0794072", "left branch to common carotid artery"),
("left branch of vagus nerve to ipsilateral internal carotid artery", "ILX:0794087"),
("left branch of vagus nerve to ipsilateral internal jugular vein", "ILX:0794081"),
("left branch to thryoid gland from the cervical vagus", "ILX:0796543"),
("left broken branch of vagus nerve", "ILX:0795586"),
("left cardiovascular and cardiopulmonary branch of vagus nerve", "ILX:0795951"),
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("left cardiovascular branch group of cervical vagus nerve", "ILX:0795395"),
("left cardiovascular branch group of thoracic vagus nerve", "ILX:0795428"),
("left cervical cardiac branch of vagus nerve", "ILX:0794171", "left cervical cardiac branch"),
("left pharyngeal branch of cranial nerve bundle", "ILX:0795532"),
("left pulmonary branch of vagus nerve", "ILX:0796033", "left pulmonary branch"),
("left unknown branch of vagus nerve", "ILX:0793929"),

# anterior vagus, a continuation of left vagus
("anterior esophageal vagus trunk", "ILX:0794854"),
Expand Down
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