devcontainer.json

{
    "name": "nfcore",
    "build": {
        "dockerfile": "../.github/gitpod.Dockerfile"
    },
    "remoteUser": "gitpod",
    "features": {
        "ghcr.io/devcontainers/features/docker-outside-of-docker:1": {}
    },
    "remoteEnv": {
        "NXF_HOME": "/workspaces/.nextflow",
        "HOST_PROJECT_PATH": "${localWorkspaceFolder}"
    },
    // Configure tool-specific properties.
    "customizations": {
        // Configure properties specific to VS Code.
        "vscode": {
            // Set *default* container specific settings.json values on container create.
            "settings": {
                "python.defaultInterpreterPath": "/opt/conda/bin/python"
            },
            // Add the IDs of extensions you want installed when the container is created.
            "extensions": [
                "ms-python.python",
                "ms-python.vscode-pylance",
                "nf-core.nf-core-extensionpack",
                "nextflow.nextflow",
                "codezombiech.gitignore"
            ]
        }
    },
    "portsAttributes": {
        "3000": {
            "label": "Application",
            "onAutoForward": "openPreview"
        }
    }
}