-
Notifications
You must be signed in to change notification settings - Fork 786
Expand file tree
/
Copy pathTowerFactory.groovy
More file actions
99 lines (87 loc) · 3.5 KB
/
TowerFactory.groovy
File metadata and controls
99 lines (87 loc) · 3.5 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
/*
* Copyright 2013-2026, Seqera Labs
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package io.seqera.tower.plugin
import groovy.transform.CompileStatic
import groovy.transform.Memoized
import groovy.util.logging.Slf4j
import nextflow.Global
import nextflow.Session
import nextflow.SysEnv
import nextflow.file.http.XAuthProvider
import nextflow.file.http.XAuthRegistry
import nextflow.trace.TraceObserverFactoryV2
import nextflow.trace.TraceObserverV2
import nextflow.util.Duration
/**
* Create and register the Tower observer instance
*
* @author Paolo Di Tommaso <paolo.ditommaso@gmail.com>
*/
@Slf4j
@CompileStatic
class TowerFactory implements TraceObserverFactoryV2 {
private Map<String,String> env
TowerFactory(){
env = SysEnv.get()
}
@Override
Collection<TraceObserverV2> create(Session session) {
final client = client(session, env)
if( !client )
return Collections.emptyList()
final result = new ArrayList<TraceObserverV2>(1)
// create the tower client
result.add(client)
// create the logs checkpoint
if( session.cloudCachePath )
result.add( new LogsCheckpoint() )
return result
}
static protected TowerClient createTowerClient0(Session session, TowerConfig config, Map env) {
final opts = session.config.tower as Map ?: Collections.emptyMap()
Duration requestInterval = opts.requestInterval as Duration
Duration aliveInterval = opts.aliveInterval as Duration
final tower = new TowerClient(session, config).withEnvironment(env)
if( aliveInterval )
tower.aliveInterval = aliveInterval
if( requestInterval )
tower.requestInterval = requestInterval
tower.initHttpClient()
// register auth provider
// note: this is needed to authorize access to resources via XFileSystemProvider used by NF
// it's not needed by the tower client logic
XAuthRegistry.instance.register(provider(config.endpoint, config.accessToken))
return tower
}
static protected XAuthProvider provider(String endpoint, String accessToken) {
if (endpoint.endsWith('/'))
throw new IllegalArgumentException("Seqera Platform endpoint URL should not end with a `/` character -- offending value: $endpoint")
final refreshToken = SysEnv.get('TOWER_REFRESH_TOKEN')
return new TowerXAuth(endpoint, accessToken, refreshToken)
}
@Memoized
static TowerClient client(Session session, Map<String,String> env) {
final opts = session.config.tower as Map ?: Collections.emptyMap()
final config = new TowerConfig(opts, env)
Boolean isEnabled = config.enabled || config.accessToken || env.get('TOWER_WORKFLOW_ID') || session.config.navigate('fusion.enabled') as Boolean
return isEnabled
? createTowerClient0(session, config, env)
: null
}
static TowerClient client() {
client(Global.session as Session, SysEnv.get())
}
}