I'm getting used to luna. After creating the environment with docker, I found a lot of problems when running notebooks in the tutorial.
In 2_tiling-file, the save_tiles command parameters have changed a lot, where --num_cores and --dataset-id parameters are not recognized correctly.
In 3_model-training, the train_tissue_classifier command is even not available. In addition, I reviewed the luna.pathology.cli module in the dev branch and found no definition of train_tissue_classifier.
Later, I tried the release of pyluna 0.3.3 and installed it in the docker image of the luna_tutorial. When trying to run the first code block in 1_dataset-prep, threw an error, "ModuleNotFoundError: No module named 'luna'". however, pip list |grep luna found the pyluna module. When I tried to import the pyluna module by import pyluna, threw an error, "ModuleNotFoundError: No module named 'pyluna'", too.
I think the reason for the above errors and issues is no right stable release or correct branch for user. Therefore, I expect the development team to release a new stable version. Or tell the user in the tutorial which branch they should use to install luna.
I'm getting used to
luna. After creating the environment with docker, I found a lot of problems when running notebooks in the tutorial.In
2_tiling-file, thesave_tilescommand parameters have changed a lot, where--num_coresand--dataset-idparameters are not recognized correctly.In
3_model-training, thetrain_tissue_classifiercommand is even not available. In addition, I reviewed the luna.pathology.cli module in thedevbranch and found no definition oftrain_tissue_classifier.Later, I tried the release of
pyluna 0.3.3and installed it in the docker image of the luna_tutorial. When trying to run the first code block in1_dataset-prep, threw an error, "ModuleNotFoundError: No module named 'luna'". however,pip list |grep lunafound thepylunamodule. When I tried to import thepylunamodule byimport pyluna, threw an error, "ModuleNotFoundError: No module named 'pyluna'", too.I think the reason for the above errors and issues is no right stable release or correct branch for user. Therefore, I expect the development team to release a new stable version. Or tell the user in the tutorial which branch they should use to install
luna.