From 1b478d4a4b6af9f3783f3068cadf19e52e9c961b Mon Sep 17 00:00:00 2001 From: Damien Goutte-Gattat Date: Tue, 23 Jun 2026 16:24:35 +0100 Subject: [PATCH] Add remaining missing terms from TiM 2025. This commit completes the NTRs rsulting from the TiM 2025 workshop (#7). --- src/ontology/fbbi-edit.owl | 99 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 99 insertions(+) diff --git a/src/ontology/fbbi-edit.owl b/src/ontology/fbbi-edit.owl index c0c4871..d81579f 100644 --- a/src/ontology/fbbi-edit.owl +++ b/src/ontology/fbbi-edit.owl @@ -673,6 +673,16 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(ObjectProperty()) Declaration(AnnotationProperty()) @@ -6642,6 +6652,95 @@ AnnotationAssertion( "optical anisotropy") SubClassOf( ) +# Class: (fluorescent protein derived from Branchiostoma) + +AnnotationAssertion( "visualization of fluorescent protein derived from Branchiostoma") +AnnotationAssertion( ) +AnnotationAssertion( "2026-06-23T14:42:00Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "fluorescent protein derived from Branchiostoma") +SubClassOf( ) + +# Class: (green fluorescent protein from Branchiostoma) + +AnnotationAssertion( "visualization of green fluorescent protein from Branchiostoma") +AnnotationAssertion( ) +AnnotationAssertion( "2026-06-23T14:44:18Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "green fluorescent protein from Branchiostoma") +EquivalentClasses( ObjectIntersectionOf( )) + +# Class: (mNeonGreen) + +AnnotationAssertion( "A visualization method that detects proteins labeled with the mNeonGreen fluorescent protein tag from Branchiostoma lanceolatum.") +AnnotationAssertion( "visualization of mNeonGreen") +AnnotationAssertion( ) +AnnotationAssertion( "2026-06-23T14:45:44Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "mNeonGreen") +SubClassOf( ) +SubClassOf( ) + +# Class: (Cy3B) + +AnnotationAssertion( "A visualization method that detects a probe conjugated to a Cy3B label.") +AnnotationAssertion( "visualization of Cy3B") +AnnotationAssertion( ) +AnnotationAssertion( "2026-06-23T14:50:01Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "Cy3B") +SubClassOf( ) + +# Class: (HiLyte647) + +AnnotationAssertion( "A visualization method that detects a probe conjugated to a HiLyte647 label.") +AnnotationAssertion( "visualization of HiLyte647") +AnnotationAssertion( ) +AnnotationAssertion( "2026-06-23T14:51:00Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "HiLyte647") +SubClassOf( ) + +# Class: (SR2200) + +AnnotationAssertion(Annotation( "doi:10.21769/BioProtoc.1935") "A visualization method that detects the SR2200 dye, typically used to stain cell walls.") +AnnotationAssertion( "visualization of SR2200") +AnnotationAssertion( ) +AnnotationAssertion( "2026-06-23T14:56:22Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "SR2200") +SubClassOf( ) + +# Class: (photobleaching) + +AnnotationAssertion( "A method that images the photobleaching of a fluorophore.") +AnnotationAssertion( "visualization of photobleaching") +AnnotationAssertion( ) +AnnotationAssertion( "2026-06-23T15:01:49Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "photobleaching") +SubClassOf( ) + +# Class: (phototoxicity) + +AnnotationAssertion( "A method that images the phototoxicity of a fluorophore.") +AnnotationAssertion( "visualization of phototoxicity") +AnnotationAssertion( ) +AnnotationAssertion( "2026-06-23T15:02:37Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "phototoxicity") +SubClassOf( ) + +# Class: (adherent live cells) + +AnnotationAssertion( "A sample preparation method allowing the imaging of adherent living cells.") +AnnotationAssertion( "preparation of adherent live cells") +AnnotationAssertion( ) +AnnotationAssertion( "2026-06-23T15:05:47Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "adherent live cells") +SubClassOf( ) + +# Class: (stably transfected cells) + +AnnotationAssertion( "A sample preparation method allowing the image of stably transfected cells.") +AnnotationAssertion( "preparation of stably transfected cells") +AnnotationAssertion( ) +AnnotationAssertion( "2026-06-23T15:14:54Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "stably transfected cells") +SubClassOf( ) + # Class: (method involved in biological imaging) AnnotationAssertion( "image")