From 686c0e9b57100b425c88117bbdf05d1a9f125dfb Mon Sep 17 00:00:00 2001 From: Tiago Lubiana Date: Thu, 7 May 2026 13:03:51 -0300 Subject: [PATCH 1/3] Add term for Laser Scanning Confocal Microscopy --- src/ontology/fbbi-edit.owl | 16 ++++++++++++++-- 1 file changed, 14 insertions(+), 2 deletions(-) diff --git a/src/ontology/fbbi-edit.owl b/src/ontology/fbbi-edit.owl index b6d4245..9967911 100644 --- a/src/ontology/fbbi-edit.owl +++ b/src/ontology/fbbi-edit.owl @@ -672,6 +672,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(ObjectProperty()) Declaration(AnnotationProperty()) @@ -2666,7 +2667,7 @@ AnnotationAssertion( "FBbi:00000252") AnnotationAssertion(rdfs:label "single-spot confocal microscopy") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (spinning disk confocal microscopy) @@ -4003,7 +4004,7 @@ AnnotationAssertion( "FBbi:00000393") AnnotationAssertion(rdfs:label "array-scan confocal microscopy") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (spot detector) @@ -6638,6 +6639,17 @@ AnnotationAssertion( "optical anisotropy") SubClassOf( ) +# Class: (laser scanning confocal microscopy) + +AnnotationAssertion( "A confocal microscopy method in which mirrors are used to scan the laser across the sample.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(Annotation( ) "CLSM") +AnnotationAssertion(Annotation( ) "LSCM") +AnnotationAssertion( "confocal laser scanning microscopy") +AnnotationAssertion(rdfs:label "laser scanning confocal microscopy"@pt) +SubClassOf( ) + # Class: (method involved in biological imaging) AnnotationAssertion( "image") From a18eb3a28a3258b22159b673735871cc2bad1ffb Mon Sep 17 00:00:00 2001 From: Tiago Lubiana Date: Fri, 8 May 2026 04:50:36 -0300 Subject: [PATCH 2/3] Fix ID, label and dc:date --- src/ontology/fbbi-edit.owl | 27 ++++++++++++++------------- 1 file changed, 14 insertions(+), 13 deletions(-) diff --git a/src/ontology/fbbi-edit.owl b/src/ontology/fbbi-edit.owl index 9967911..64d1d59 100644 --- a/src/ontology/fbbi-edit.owl +++ b/src/ontology/fbbi-edit.owl @@ -672,7 +672,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(ObjectProperty()) Declaration(AnnotationProperty()) @@ -2667,7 +2667,7 @@ AnnotationAssertion( "FBbi:00000252") AnnotationAssertion(rdfs:label "single-spot confocal microscopy") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (spinning disk confocal microscopy) @@ -4004,7 +4004,7 @@ AnnotationAssertion( "FBbi:00000393") AnnotationAssertion(rdfs:label "array-scan confocal microscopy") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (spot detector) @@ -6639,16 +6639,17 @@ AnnotationAssertion( "optical anisotropy") SubClassOf( ) -# Class: (laser scanning confocal microscopy) - -AnnotationAssertion( "A confocal microscopy method in which mirrors are used to scan the laser across the sample.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(Annotation( ) "CLSM") -AnnotationAssertion(Annotation( ) "LSCM") -AnnotationAssertion( "confocal laser scanning microscopy") -AnnotationAssertion(rdfs:label "laser scanning confocal microscopy"@pt) -SubClassOf( ) +# Class: (laser scanning confocal microscopy) + +AnnotationAssertion( "A confocal microscopy method in which mirrors are used to scan the laser across the sample.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2026-05-08T07:47:23Z") +AnnotationAssertion(Annotation( ) "CLSM") +AnnotationAssertion(Annotation( ) "LSCM") +AnnotationAssertion( "confocal laser scanning microscopy") +AnnotationAssertion(rdfs:label "laser scanning confocal microscopy") +SubClassOf( ) # Class: (method involved in biological imaging) From e2366cd59ecf627aebf098fd6bb3a44f7804a4d9 Mon Sep 17 00:00:00 2001 From: Tiago Lubiana Date: Fri, 8 May 2026 05:44:36 -0300 Subject: [PATCH 3/3] Add reference to LSCM definition --- src/ontology/fbbi-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/fbbi-edit.owl b/src/ontology/fbbi-edit.owl index 64d1d59..1ddde1e 100644 --- a/src/ontology/fbbi-edit.owl +++ b/src/ontology/fbbi-edit.owl @@ -6641,7 +6641,7 @@ SubClassOf( (laser scanning confocal microscopy) -AnnotationAssertion( "A confocal microscopy method in which mirrors are used to scan the laser across the sample.") +AnnotationAssertion(Annotation( "PMID:31876974") "A confocal microscopy method in which mirrors are used to scan the laser across the sample.") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2026-05-08T07:47:23Z")