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"""Shared post-extraction dataset pruning for predictive and fallback flows."""
from __future__ import annotations
from dataclasses import dataclass, field
import json
import logging
from typing import Any
import pandas as pd
from llm import LLMError, LLMGateway
from settings import get_settings
LOGGER = logging.getLogger(__name__)
PROTECTED_METADATA_COLUMNS = {"name", "entity_name", "raw_entity_name", "source", "source_url"}
@dataclass(slots=True)
class PruningResult:
"""Pruned dataframe plus audit metadata."""
dataframe: pd.DataFrame
provenance_map: dict[str, str]
pruning_audit: dict[str, Any] = field(default_factory=dict)
@dataclass(slots=True)
class PostExtractionPruner:
"""Apply shared statistical and optional semantic pruning after extraction."""
goal: str
target_field: str | None = None
core_feature_fields: list[str] = field(default_factory=list)
required_feature_fields: list[str] = field(default_factory=list)
llm_gateway: LLMGateway | None = None
def process(
self,
dataframe: pd.DataFrame,
*,
provenance_map: dict[str, str] | None = None,
) -> PruningResult:
pruned = dataframe.copy()
if pruned.empty:
return PruningResult(
dataframe=pruned,
provenance_map=self._prune_provenance_map(provenance_map or {}, pruned.columns),
pruning_audit={},
)
target_column = self._resolve_quality_column(pruned, [self.target_field] if self.target_field else [])
if target_column is None:
LOGGER.info("Skipping dataset pruning because target column '%s' could not be resolved", self.target_field)
return PruningResult(
dataframe=pruned.reset_index(drop=True),
provenance_map=self._prune_provenance_map(provenance_map or {}, pruned.columns),
pruning_audit={},
)
original_row_count = len(pruned)
original_columns = list(map(str, pruned.columns))
protected_columns = self._protected_schema_columns()
missing_target_mask = self._series_missing_mask(pruned[target_column])
rows_missing_target = int(missing_target_mask.sum())
if rows_missing_target:
pruned = pruned.loc[~missing_target_mask].copy()
feature_columns = [
column
for column in pruned.columns
if column != target_column and str(column) not in PROTECTED_METADATA_COLUMNS
]
rows_sparse_features = 0
if feature_columns:
feature_missing = pd.DataFrame(
{str(column): self._series_missing_mask(pruned[column]) for column in feature_columns},
index=pruned.index,
)
rows_sparse_mask = feature_missing.mean(axis=1) > 0.50
rows_sparse_features = int(rows_sparse_mask.sum())
if rows_sparse_features:
pruned = pruned.loc[~rows_sparse_mask].copy()
sparse_columns = [
str(column)
for column in pruned.columns
if (
column != target_column
and str(column) not in PROTECTED_METADATA_COLUMNS
and str(column) not in protected_columns
and self._missing_rate(pruned[column]) > 0.40
)
]
if sparse_columns:
pruned = pruned.drop(columns=sparse_columns, errors="ignore")
zero_variance_columns = [
str(column)
for column in pruned.columns
if (
column != target_column
and str(column) not in PROTECTED_METADATA_COLUMNS
and str(column) not in protected_columns
and self._has_zero_variance(pruned[column])
)
]
if zero_variance_columns:
pruned = pruned.drop(columns=zero_variance_columns, errors="ignore")
semantic_columns = self._semantic_prune_columns(pruned, target_column=target_column)
if semantic_columns:
pruned = pruned.drop(columns=semantic_columns, errors="ignore")
remaining_columns = [column for column in original_columns if column in pruned.columns]
pruned = pruned.loc[:, remaining_columns].reset_index(drop=True)
pruning_audit = {
"target_column": target_column,
"rows_before": original_row_count,
"rows_after": int(len(pruned)),
"columns_before": list(original_columns),
"columns_after": list(map(str, pruned.columns)),
"dropped_rows_missing_target": rows_missing_target,
"dropped_rows_sparse_features": rows_sparse_features,
"dropped_sparse_columns": sorted(sparse_columns),
"dropped_zero_variance_columns": sorted(zero_variance_columns),
"dropped_semantic_columns": sorted(semantic_columns),
"protected_schema_columns": sorted(protected_columns),
"semantic_pruning_enabled": self._semantic_pruning_enabled(),
}
pruned.attrs["pruning_audit"] = pruning_audit
LOGGER.info(
"Pruned dataset rows/columns: dropped %d rows missing target, %d rows with >50%% missing features, %d sparse columns, %d zero-variance columns, %d semantically irrelevant columns",
rows_missing_target,
rows_sparse_features,
len(sparse_columns),
len(zero_variance_columns),
len(semantic_columns),
)
if sparse_columns:
LOGGER.info("Dropped sparse columns: %s", ", ".join(sorted(sparse_columns)))
if zero_variance_columns:
LOGGER.info("Dropped zero-variance columns: %s", ", ".join(sorted(zero_variance_columns)))
if semantic_columns:
LOGGER.info(
"Dropped semantically irrelevant columns for target '%s': %s",
target_column,
", ".join(sorted(semantic_columns)),
)
return PruningResult(
dataframe=pruned,
provenance_map=self._prune_provenance_map(provenance_map or {}, pruned.columns),
pruning_audit=pruning_audit,
)
def _semantic_prune_columns(self, frame: pd.DataFrame, *, target_column: str) -> list[str]:
if not self._semantic_pruning_enabled():
return []
candidate_columns = [
str(column)
for column in frame.columns
if (
column != target_column
and str(column) not in PROTECTED_METADATA_COLUMNS
and str(column) not in self._expected_schema_fields()
)
]
if not candidate_columns:
return []
gateway = self._get_semantic_pruning_gateway()
if gateway is None:
return []
system_prompt = (
"You are a machine learning feature-pruning assistant. "
"Review candidate dataset columns and identify columns that are clearly UI artifacts, random noise, page chrome, rankings-only clutter, or otherwise irrelevant to predicting the target variable. "
"Be conservative: keep plausible business, statistical, demographic, operational, or domain features. "
"Return JSON only."
)
user_prompt = (
f"Identify any columns in this list that are clearly UI artifacts, random noise, or completely irrelevant to predicting the target variable '{target_column}'. "
"Return a JSON list of column names to drop.\n\n"
f"Columns:\n{json.dumps(candidate_columns, indent=2)}"
)
try:
response = gateway.complete_text(
system_prompt=system_prompt,
user_prompt=user_prompt,
max_tokens=300,
)
parsed = self._parse_json_list(response)
except LLMError as exc:
LOGGER.warning("Semantic pruning skipped because the LLM call failed: %s", exc)
return []
except ValueError as exc:
LOGGER.warning("Semantic pruning skipped because the LLM returned invalid JSON: %s", exc)
return []
valid_columns = set(candidate_columns)
drops: list[str] = []
seen: set[str] = set()
for column in parsed:
normalized = str(column).strip()
if normalized in valid_columns and normalized not in seen:
seen.add(normalized)
drops.append(normalized)
return drops
def _get_semantic_pruning_gateway(self) -> LLMGateway | None:
if self.llm_gateway is not None:
return self.llm_gateway
try:
self.llm_gateway = LLMGateway(model="gpt-4o-mini", max_tokens=400)
except LLMError as primary_exc:
LOGGER.warning("Fast semantic pruning model unavailable: %s", primary_exc)
try:
self.llm_gateway = LLMGateway(max_tokens=400)
except LLMError as fallback_exc:
LOGGER.warning("Semantic pruning disabled because no LLM gateway is available: %s", fallback_exc)
return None
return self.llm_gateway
def _semantic_pruning_enabled(self) -> bool:
return bool(get_settings().enable_semantic_feature_pruning)
def _protected_schema_columns(self) -> set[str]:
protected = {field_name for field_name in self.required_feature_fields if field_name}
if self.target_field:
protected.add(self.target_field)
return protected
def _expected_schema_fields(self) -> list[str]:
ordered: list[str] = []
seen: set[str] = set()
for field_name in [*self.core_feature_fields, self.target_field]:
if not field_name or field_name in seen:
continue
seen.add(field_name)
ordered.append(field_name)
return ordered
def _resolve_quality_column(self, frame: pd.DataFrame, field_names: list[str]) -> str | None:
if not field_names:
return None
normalized_columns = {str(column): self._normalize_column_name(str(column)) for column in frame.columns}
for field_name in field_names:
if not field_name:
continue
if field_name in frame.columns:
return field_name
for field_name in field_names:
if not field_name:
continue
normalized_field = self._normalize_column_name(field_name)
for column, normalized_column in normalized_columns.items():
if normalized_column == normalized_field:
return column
for column, normalized_column in normalized_columns.items():
if normalized_column.startswith(normalized_field) or normalized_field in normalized_column:
return column
return None
def _series_missing_mask(self, series: pd.Series) -> pd.Series:
missing = series.isna()
if pd.api.types.is_object_dtype(series) or pd.api.types.is_string_dtype(series):
normalized = series.fillna("").astype(str).str.strip().str.casefold()
missing = missing | normalized.isin({"", "unknown", "n/a", "na", "none", "null"})
return missing
def _missing_rate(self, series: pd.Series) -> float:
if len(series) == 0:
return 1.0
return float(self._series_missing_mask(series).mean())
def _has_zero_variance(self, series: pd.Series) -> bool:
if len(series) == 0:
return True
non_missing = series.loc[~self._series_missing_mask(series)]
if non_missing.empty:
return True
normalized = non_missing.map(lambda value: str(value).strip().casefold() if isinstance(value, str) else value)
return normalized.nunique(dropna=True) <= 1
def _prune_provenance_map(self, provenance_map: dict[str, str], columns: Any) -> dict[str, str]:
column_names = {str(column) for column in columns}
return {
column: source
for column, source in provenance_map.items()
if column in column_names
}
def _parse_json_list(self, value: str) -> list[str]:
cleaned = value.strip()
start = cleaned.find("[")
end = cleaned.rfind("]")
if start != -1 and end != -1 and end > start:
cleaned = cleaned[start : end + 1]
parsed = json.loads(cleaned)
if not isinstance(parsed, list):
raise ValueError("Expected a JSON list")
return [str(item) for item in parsed if isinstance(item, str)]
def _normalize_column_name(self, column: str) -> str:
normalized = "".join(character.lower() if character.isalnum() else "_" for character in str(column))
normalized = "_".join(part for part in normalized.split("_") if part)
return normalized or "column"