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Release summary

This is a major release (0.5.1 -> 1.0.0). It contains a number of breaking changes, which are listed first in NEWS.md. The most user-visible ones are:

  • get_sysreqs(), use_recommended_deps() and add_rstudioconnect_file() have been removed (add_rstudioconnect_file() is replaced by add_positconnect_file()).
  • The path-style arguments of all functions (wd, path, pkg) have been standardized to a single golem_wd argument.
  • get_current_config() no longer guesses non-standard config paths.

R CMD check results

0 errors | 0 warnings | 0 notes

Reverse dependencies

We ran R CMD check on the reverse dependencies of golem with revdepcheck (63 packages).

  • We saw 0 new problems caused by golem.
  • One package, spatialLIBD, is reported as broken. Its failures are not caused by golem: they come from external data downloads being unavailable in the check environment, not from any golem API. Specifically:
    • checking examples fails in the add_images example, where fetch_data("spe") reads a corrupt/incomplete BiocFileCache download and errors with error reading from connection in load().
    • checking running R code from vignettes fails in TenX_data_download.Rmd, where an FTP download from ftp://ftp.ebi.ac.uk/...gencode.v32.annotation.gtf.gz could not be reached (bfcadd() failed; download failed). Neither failing code path calls golem. spatialLIBD imports only with_golem_options, get_golem_options, activate_js and favicon, none of which changed in a way that affects it. Against the current CRAN version of golem (0.5.1) this package previously timed out, so the dev version is not a regression.