Rename the functional element N2d to N1d

- to be consistent with the definition of N3 and N5
- N1d is a nitrogen atom that has one single bond and provides one
electron to bonding

e.g.: H2NN

1 H 0 0 {3,S}
2 H 0 0 {3,S}
3 N5d 0 0 {1,S} {2,S} {4,D}
4 N1d 0 2 {3,D}

Author: bbuesser

input/kinetics/families/R_Addition_MultipleBond/groups.py

@@ -26432,7 +26432,7 @@
 entry(
     index = 314,
     label = "Nd_R",
-    group = "OR{N3d_R}",
+    group = "OR{N1d_R,N3d_R}",
     kinetics = None,
     reference = None,
     referenceType = "",
@@ -28049,6 +28049,27 @@
     ],
 )
 
+entry(
+    index = 394,
+    label = "N1d_R",
+    group = 
+"""
+1 *1 N1d 0 2 {2,D}
+2 *2 R!H 0 0 {1,D}
+""",
+    kinetics = None,
+    reference = None,
+    referenceType = "",
+    shortDesc = u"""""",
+    longDesc = 
+u"""
+
+""",
+    history = [
+        ("Mon Nov  4 10:25:25 2013","Beat Buesser <bbuesser@mit.edu>","action","""Beat Buesser <bbuesser@mit.edu> created this value."""),
+    ],
+)
+
 tree(
 """
 L1: R_R
@@ -28942,6 +28963,7 @@
             L4: Od_N3d
             L4: Od_N5d
     L2: Nd_R
+        L3: N1d_R
         L3: N3d_R
             L4: N3d_Cd
                 L5: N3d_Cds

input/thermo/groups/group.py

@@ -47866,7 +47866,7 @@
     label = "N",
     group = 
 """
-1 * {N2d,N3s,N3d,N3t,N5s,N5d,N5dd,N5t} 0
+1 * {N1d,N3s,N3d,N3t,N5s,N5d,N5dd,N5t} 0
 """,
     thermo = ThermoData(
         Tdata = ([300,400,500,600,800,1000,1500],'K'),
@@ -47886,10 +47886,10 @@
 
 entry(
     index = 1922,
-    label = "N2d",
+    label = "N1d",
     group = 
 """
-1 * N2d 0
+1 * N1d 0 2
 """,
     thermo = ThermoData(
         Tdata = ([300,400,500,600,800,1000,1500],'K'),
@@ -47912,7 +47912,7 @@
     label = "N3s",
     group = 
 """
-1 * N3s 0
+1 * N3s 0 1
 """,
     thermo = None,
     shortDesc = u"""""",
@@ -51353,7 +51353,7 @@
                 L5: Ss-CtCb
                 L5: Ss-CbCb
     L2: N
-        L3: N2d
+        L3: N1d
         L3: N3s
             L4: N3s-CHH
                 L5: N3s-CsHH