Fix radical.py for entry acessibility

move bicyclo[1.1.1]pentane-C2 up a level in tree
move bicyclo[1.1.0]butane-secondary lower in sibling list
move cyclopentene-4 up in sibling list to make its child bicyclo[2.1.1]hex-2-ene-C5 acessible
moved bicyclo[2.1.0]pent-2-ene-C5 from parent cyclopropane to another parent cyclopentene-4
move tricyclo[2.1.1.0(1,4)]hex-2-ene-C5 to be child of bicyclo[2.1.1]hex-2-ene-C5
move tricyclo[1.1.1.0(1,3)]pentane-C2 to be a child of bicyclo[1.1.1]pentane-C2
move tricyclo[2.1.1.0(1,4)]hexane-C2 up in sibling list
move tricyclo[2.1.1.0(1,4)]hexane-C5 to be child of bicyclo[2.1.1]hexane-C5
move bicyclo[4.1.0]heptane-C6-2, bicyclo[4.1.0]heptane-C6-3, bicyclo[4.1.0]heptane-C6-3 up in sibling list above cycloheptane
move bicyclo[3.1.1]heptane-C6 up sibling list above cyclobutane
move bicyclo[3.1.1]heptane-C2 up sibling list above bicyclo[3.1.0]hexane-C5-2 to make its child tricyclo[3.1.1.0(1,5)]heptane-C2 acessibile
move tricyclo[3.1.1.0(1,5)]heptane-C6 up sibling list above bicyclo[1.1.0]butane-secondary
move tricyclo[2.2.1.0(1,4)]heptane-C2 up sibling list above cyclobutane
move tricyclo[2.2.1.0(1,4)]heptane-C7 up siblig list above bicyclo[2.1.0]pentane-secondary-C3
move bicyclo[4.2.0]octane-C4-7 up sibling list above cyclobutane
move bicyclo[2.2.2]octane-C2 up sibling list above cyclobutane for its child tricyclo[2.2.2.0(1,4)]octane-C2

Author: nyee

input/thermo/groups/radical.py

@@ -6218,54 +6218,54 @@
                     L6: C2JC=O
                 L5: Cs_S
                     L6: (Cs)2CsJ
+                        L7: cyclopentene-4
+                            L8: bicyclo[2.1.1]hex-2-ene-C5
+                                L9: tricyclo[2.1.1.0(1,4)]hex-2-ene-C5
+                            L8: bicyclo[2.1.0]pent-2-ene-C5
+                        L7: bicyclo[1.1.1]pentane-C2
+                            L8: tricyclo[1.1.1.0(1,3)]pentane-C2
+                        L7: bicyclo[2.1.1]hexane-C5
+                            L8: tricyclo[2.1.1.0(1,4)]hexane-C5
                         L7: cyclopropane
-                            L8: bicyclo[1.1.0]butane-secondary
                             L8: spiro[2.2]pentane-secondary
+                            L8: tricyclo[2.2.1.0(1,4)]heptane-C7
                             L8: bicyclo[2.1.0]pentane-secondary-C3
-                            L8: bicyclo[2.1.0]pent-2-ene-C5
-                                L9: tricyclo[2.1.1.0(1,4)]hex-2-ene-C5
-                            L8: tricyclo[1.1.1.0(1,3)]pentane-C2
+                            L8: tricyclo[3.1.1.0(1,5)]heptane-C6
+                            L8: bicyclo[1.1.0]butane-secondary
                             L8: bicyclo[3.1.0]hexane-C3
-                            L8: tricyclo[2.1.1.0(1,4)]hexane-C5
                             L8: bicyclo[4.1.0]heptane-C3-7
                             L8: bicyclo[4.1.0]heptane-C3-7
-                            L8: tricyclo[3.1.1.0(1,5)]heptane-C6
-                            L8: tricyclo[2.2.1.0(1,4)]heptane-C7
+                        L7: tricyclo[2.1.1.0(1,4)]hexane-C2
+                        L7: bicyclo[3.1.1]heptane-C6
+                        L7: tricyclo[2.2.1.0(1,4)]heptane-C2
+                        L7: bicyclo[4.2.0]octane-C4-7
+                        L7: bicyclo[2.2.2]octane-C2
+                            L8: tricyclo[2.2.2.0(1,4)]octane-C2
                         L7: cyclobutane
                             L8: bicyclo[2.1.0]pentane-secondary-C4
                             L8: bicyclo[2.2.0]hexane-secondary
                             L8: bicyclo[3.2.0]heptane-C5-6
                         L7: CCJCOOH
-                        L7: cyclopentene-4
-                            L8: bicyclo[2.1.1]hex-2-ene-C5
-                        L7: bicyclo[1.1.1]pentane-C2
+                        L7: bicyclo[3.1.1]heptane-C2
+                            L8: tricyclo[3.1.1.0(1,5)]heptane-C2
                         L7: bicyclo[3.1.0]hexane-C5-2
                         L7: bicyclo[3.1.0]hexane-C5-3
                         L7: bicyclo[2.1.1]hexane-C2
-                            L8: tricyclo[2.1.1.0(1,4)]hexane-C2
-                        L7: bicyclo[2.1.1]hexane-C5
                         L7: 7-norbornyl
                         L7: 2-norbornyl
+                        L7: bicyclo[4.1.0]heptane-C6-2
+                        L7: bicyclo[4.1.0]heptane-C6-3
+                        L7: bicyclo[4.1.0]heptane-C6-3
                         L7: cycloheptane
                             L8: bicyclo[3.2.0]heptane-C5-2
                             L8: bicyclo[3.2.0]heptane-C5-3
                         L7: bicyclo[4.1.0]heptane-C6-2
-                        L7: bicyclo[4.1.0]heptane-C6-3
-                        L7: bicyclo[4.1.0]heptane-C6-2
-                        L7: bicyclo[4.1.0]heptane-C6-3
-                        L7: bicyclo[3.1.1]heptane-C2
-                            L8: tricyclo[3.1.1.0(1,5)]heptane-C2
                         L7: bicyclo[3.1.1]heptane-C3
                             L8: tricyclo[3.1.1.0(1,5)]heptane-C3
-                        L7: bicyclo[3.1.1]heptane-C6
-                        L7: tricyclo[2.2.1.0(1,4)]heptane-C2
                         L7: octahydro-pentalene-C5-2
                         L7: octahydro-pentalene-C5-3
                         L7: bicyclo[4.2.0]octane-C6-2
                         L7: bicyclo[4.2.0]octane-C6-3
-                        L7: bicyclo[4.2.0]octane-C4-7
-                        L7: bicyclo[2.2.2]octane-C2
-                            L8: tricyclo[2.2.2.0(1,4)]octane-C2
                         L7: CCJC
                         L7: RCCJC
                         L7: RCCJCC